Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01494 ATGGCCATTCTCCTCTGCACGCCACTTCCATTTCTTTCTCTGAGAAACCCCTTCAATTCCTCCAAGTCCACGTTAACCTCAACACTGACGAACCCAACAACAAGAACTCGGTTGTGCCAAGCGATGAACACGTTCGCCAAATCCGAACCCGCGTCGTCCTCAGCCTCGGCGTCAACGTACCAGGTGCCGGAGCATGATGCTAACGACATGGACCGCGTTGTAGACAACGCGTTTCGAAGGTACACGTCCGACACCAAGAGGAGTGGCAAAGGAACCGCCATTGTGTGGTTCAGGAACGATCTCAGAGTTTTGGACAATGAGGCTCTCTACAAGGCATGGCTTTATTCCGAAACCGTGTTACCTGTCTATTGTGTTGATCCTCGACTCTTTGCCACTACTTATCACTTCGGCTTTCCGAAAACCGGTGCATTGAGAGCGCAGTTTCTCCTTGAATGCTTGGCTGACTTGAGGAAGAATTTGATGAAGAAAGGACTTAATTTGCTTGTACAACATGGGAAGCCTGAGGATATTCTTCCTTCTCTGGCAAAAGCTTTTCGAGTTCACACAGTGTATGCGCAGAAAGAAACTTGCAGTGAGGAGCTGAATGTTGAAAGGTTAGTCATCAGAGGTCTTCAACAAGTTGTGATATCACCTGAGGAGTCCAGTGGTGTCACAGTTTCAAACAACATCCCTAAGTTGCAATTTGTTTGGGGTACCACTATGTACCACCTTGATGACCTCCCTTTCGATGCCACTTGTTTGCCGGATGTGTATACTCAATTTCGCAAGATTGTTGAAGACAAATGTACCATACGCTCATGTATCAAACTACCAGCATCTCTTGGACCACCTCCCTTGGTTGAGGATTGGGGATGCCTTCCTTCATTAGAGCAGCTGGGACTTTGCTCGCAGAATGTTAGCAAAGGGATGAAGTTTGTGGGGGGTGAAACTGCAGCATTGAGTAGAGTATATGAGTACTTTTGGAAGAAGGATTTGCTAAAGGTATATAAAGAGACCAGGAATGGGATGCTAGGGCCTGATTATTCTACCAAATTCTCACCCTGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATACATGAAGAGGTGAAGAGATACGAGAACGAAAGACTAGCAAATAGTTCTACCTATTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAGGTGGCCCCAGGAAAGCTCAGCATAACTGGAGTCAAGACAAGAAGTTGTTTGAAGCCTGGAGAGATGGTTGTACCGGGTATCCTCTGATAGATGCCAATATGAAAGAATTATCAACTACAGGGTTTATGTCAAATCGAGGACGGCAGATTGTGTGTTCCTTTCTTGTTCGTGATATGGGTATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAGCTCAAACATATGACCCTGAAGGTGAGTATGTAGCATACTGGTTGCCACAGTTGCGGAAAATCCCAAAGGAGAAAAGGAACTTTCCTGGAAATTTACTATACATTCCTCAAGTTGTGCCTCTCAAGTTTGGAACAGCTAGTGGACACAATAAGGACAAGTCTTATGGTGCAAGAAGAACCAACGATAGAGGAAGTGACAGAAGATGGAACAGGAGATAA 1770 0.4497 MAILLCTPLPFLSLRNPFNSSKSTLTSTLTNPTTRTRLCQAMNTFAKSEPASSSASASTYQVPEHDANDMDRVVDNAFRRYTSDTKRSGKGTAIVWFRNDLRVLDNEALYKAWLYSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNLMKKGLNLLVQHGKPEDILPSLAKAFRVHTVYAQKETCSEELNVERLVIRGLQQVVISPEESSGVTVSNNIPKLQFVWGTTMYHLDDLPFDATCLPDVYTQFRKIVEDKCTIRSCIKLPASLGPPPLVEDWGCLPSLEQLGLCSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKAQHNWSQDKKLFEAWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIPKEKRNFPGNLLYIPQVVPLKFGTASGHNKDKSYGARRTNDRGSDRRWNRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01494 589 MobiDBLite consensus disorder prediction 566 589 - -
Cca03g01494 589 PANTHER CRYPTOCHROME DASH 83 570 - -
Cca03g01494 589 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 90 288 IPR036155 -
Cca03g01494 589 Pfam DNA photolyase 93 275 IPR006050 -
Cca03g01494 589 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 409 564 - -
Cca03g01494 589 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 310 544 IPR036134 -
Cca03g01494 589 Pfam FAD binding domain of DNA photolyase 388 543 IPR005101 -
Cca03g01494 589 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 91 226 IPR006050 -
Cca03g01494 589 Gene3D HUPs 57 238 IPR014729 -
Cca03g01494 589 Gene3D - 239 408 - -
Cca03g01494 589 PANTHER CRYPTOCHROME 83 570 IPR002081 -
Cca03g01494 589 MobiDBLite consensus disorder prediction 569 589 - -
Cca03g01494 589 PRINTS DNA photolyase signature 435 451 IPR002081 -
Cca03g01494 589 PRINTS DNA photolyase signature 455 473 IPR002081 -
Cca03g01494 589 PRINTS DNA photolyase signature 494 508 IPR002081 -
Cca03g01494 589 TIGRFAM crypto_DASH: cryptochrome, DASH family 92 534 IPR014133 GO:0003913|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01494 Cca-Chr3 33515802 33521613 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01494 K25656 - gmx:100783312 1053.51