Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01490 ATGCAAGGCAAAGAAATGGAAGGCGTGTCTTCTTCTTCCTCATCGGCGATCGCCCAGAAAACGTGGGAGCTCGAGAACAGCATCATCCCCATGGACACTCCGGCCGCCACCGCCACCACCACCAACGCCGACGACTCCATCTTCTACTACGACGAGGCCGGCCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTCCTCAAGATGGTGGTGCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAAGGGAAAACCGACGCCGACGCCATCATCGTCATGGACGCCTTCGCCCTCCCCGTCGAAGGCACCGAAACGCGCGTCAATGCGCAAGCCGATGCATACGAGTACATGGTCGATTATTCCCAGACCAATAAGCAGGCTGGGCGGTTGGAGAATGTCGTGGGATGGTATCACTCTCATCCTGGATACGGGTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCTGTGGTTATTGACCCCACGAGGACTGTTTCTGCTGGGAAGGTTGAGATTGGAGCTTTCAGGACTTACCCTGAAGGGTATAAGCCTCCGGATGAGCCTATTTCTGAGTATCAGACTATTCCTCTCAATAAGATTGAGGATTTTGGTGTCCATTGTAAACAGTATTATGCATTGGATATCACTTACTTCAAGTCCTCTCTTGATTCACACCTCTTGGATCTGCTGTGGAACAAGTATTGGGTGAATACACTCTCGTCTTCTCCTCTGTTGGGTAATGGAGACTATGTTGCTGGACAAATCTCTGATTTAGCTGAAAAGCTAGAACAAGCCGAGAATCAGTTGGCACACTCTCGCTTTGGGCCATTAATAGCGCCTGCACCTAGAAAGAAAGAGGAAGAATCTCCTCTTGCTAAGATTACTCGTGACAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCACAGGTTATCAAGGACATTCTGTTTAACTCCGTTCATCAAGCAAACAGAACTCGCAGTGAAGCATCTGGTCCTGAACCAATGATTGAGAGCTGA 1116 0.517 MQGKEMEGVSSSSSSAIAQKTWELENSIIPMDTPAATATTTNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRSEASGPEPMIES 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01490 371 SUPERFAMILY JAB1/MPN domain 73 210 - -
Cca03g01490 371 ProSiteProfiles MPN domain profile. 74 211 IPR037518 -
Cca03g01490 371 SMART pad1_6 73 210 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca03g01490 371 Gene3D Cytidine Deaminase, domain 2 10 276 - -
Cca03g01490 371 PANTHER BNAC07G13420D PROTEIN 37 363 IPR037740 GO:0004222|GO:0008180
Cca03g01490 371 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 71 182 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca03g01490 371 CDD MPN_RPN11_CSN5 63 335 - -
Cca03g01490 371 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 37 363 - -
Cca03g01490 371 Pfam Cop9 signalosome subunit 5 C-terminal domain 270 350 IPR040961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01490 Cca-Chr3 33451482 33456930 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01490 K09613 - gmx:100784909 716.072