Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01487 ATGCAACCGCATCAGAGCTCAAGAATTGATTTGGGTGAATTGAGAGCACAGATTGTAAAGAAGCTTGGAGCGGATAAGTCGAAGCGGTACTTTTATTACTTGAACAGGTTTTTGAGTCAGAAGCTAAGCAAGACTGAGTTTGATAAGTTGTGTTTTCGAGTGCTTGGTAGGGAGAATCTTCCGTTGCATAACCATTTCATAAAGTCAATTTTGAAGAATGCCTGCCAAGCCAAGACCCCGCCACCAATCCATCCATCAGGTCCCCTGAAGTCTGGAGAACATGCTTCAGATATATCTCCTGGTAGAGAAGATGGACACGAACAGAGCGTTGCCAGCTTCCAAAATCAGAATTCCAAAGCGCCCTTTTGGTCAAATGGAGTTTTACCAGCATCCCCTAAGGTTAGGTCTGGAATACGCGATTGGAAGCTAAGAGATAGACCAAGCCCCCTTGGACCAAATGGGAAGGTTGACTCTGTTTCTCACCAATCCATGGGGACAGAAGACTGTGACAGTAAGGTTGATATGGAAAATGGAATTCATACACCATGTGATTATCAGAGACCAATGCAGCATCTTCAAGCTGTTGCTGAACTACCTGAGAATGAAAGGGGAGATGCTGTTCGGCGACCTGCAGAAAAACCAAGAATACATGGGAAAGGGCCAGCTGAAATGTCAATCGTTGAAGATGGGGAAGAAGTGGATCAGTTAAAACGCCTAGGTTTCTCTAGAAGTCCCTTGATAGCACCACTGGGGATTCCTTATTGCTCAGCAAGTGTAGGGGGAGCTCGCAAAGCATTGCCAGTGAGTAGTGTGGGTGATTTTGAAAATTGTTGTGACAGTGGTAGGTTGTCTGATACAGATACACTGCGGAGGCGCATGGAGCAGATTGCTGCAGTACAAGGTCTTGGAGCTGTTTCTATGGAATGTGCCAATATGTTGAATAACATGTTGGATGTGTACTTGAAACGGTTGATAAGGTCTTGTGTTGAATTAGTTGGAGCTAGATCTACAAATGAGGTGAGGAAGCCACCTGTTCCCAAACAGCAGATGCAGGGTAAGGTCATCAATGGCATGTGGGCAAATAATCATATACACATGCCTGGTGGGTCAGCAGAGTCTGTTCCTGAACACAGACCACCATGCTCAGTTTCTTTGCATGATTTTAAGGTTGCCATGGAACTAAATCCACGGCAACTTGGAGAAGATTGGCCACTGCTGTTGGAGAAAATATCCATGCTATCATTTGAGGAATAA 1254 0.4498 MQPHQSSRIDLGELRAQIVKKLGADKSKRYFYYLNRFLSQKLSKTEFDKLCFRVLGRENLPLHNHFIKSILKNACQAKTPPPIHPSGPLKSGEHASDISPGREDGHEQSVASFQNQNSKAPFWSNGVLPASPKVRSGIRDWKLRDRPSPLGPNGKVDSVSHQSMGTEDCDSKVDMENGIHTPCDYQRPMQHLQAVAELPENERGDAVRRPAEKPRIHGKGPAEMSIVEDGEEVDQLKRLGFSRSPLIAPLGIPYCSASVGGARKALPVSSVGDFENCCDSGRLSDTDTLRRRMEQIAAVQGLGAVSMECANMLNNMLDVYLKRLIRSCVELVGARSTNEVRKPPVPKQQMQGKVINGMWANNHIHMPGGSAESVPEHRPPCSVSLHDFKVAMELNPRQLGEDWPLLLEKISMLSFEE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01487 417 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 417 IPR024738 GO:0070461
Cca03g01487 417 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 5 332 IPR024738 GO:0070461
Cca03g01487 417 MobiDBLite consensus disorder prediction 138 168 - -
Cca03g01487 417 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 417 - -
Cca03g01487 417 MobiDBLite consensus disorder prediction 77 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01487 Cca-Chr3 33393783 33396542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01487 - - gmx:100819343 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00611 05 14242253 14243509 Cca03g01487 03 33393783 33396542 PCT