Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01478 ATGGCTCCAAGGCTGGATTTTTCCAATTGGTGGACCAAGGATACACAGAAAGGAACACCAGTGGTGGTGAAAATGGAGAACCCCAATTTCTCTGTCGTGGAGATCAATGGTGCTGATGCTGCATTCAGGCCAGTGGAGAAAAGCCGTGGCAAGAATGCCAAACAAGTGACGTGGGTGTTGCTTCTGAGGGCTCACCGTGCTGTTGGTTGTGTCACTTGGCTTGCCACTGTGCTTTGGGCGTTGCTTGGAGCCATCAAGAAGAGGTTGATTCATGgagaaggtgagagtgagagtgacaagttggaaaagggaaagtTACTGTTTAGGGTCATTAGAGTGTTCCTAGTGACTTCCTTGGCAGTTCTGGCCTTTGAGGTCGTTGCTTACCTTCAAGGTTGGCATTTTGGGAATCCCACTAACTTGCACATTCCTCGTACTTCTGATTTTGAAGGCTTGCTCCACTTGGCTTATGTTGCTTGGTTAACTTTTCGTGCTGAGTATATTGCTCCTCCTATTCAGGCACTTTCCAAGTTTTGTGTTGTTTTGTTTCTTATACAGTCTGTGGATCGCATGCTCCTTTGCTTGGGGTGCTTTTGGATCAAATACAGGAAGGTTAAGCCGAAGATTGACGGGGATCCGCTCGAGATTGATGATGTTGAAGGATCAGCAAGCAATTATCCCATGGTTTTGGTTCAAATTCCAATGTGCAATGAGAGGGAGGTGTATGAGCAATCTATTTCTGCAGTCTGCCAGATTGATTGGCCTAGGGATCGTTTACTGATTCAAGTACTTGATGATTCTGATGATGAGAGTATACAGTGGTTAATTAAGACAGAGGTCTCTAAATGGAGCCAAAAGGGAATCAATATAATCTATAGGCATCGCTTAATCAGGACTGGATATAAAGCTGGAAATCTTAATTCCGCAATGAGCTGTGACTATGTGAAAGACTATGAGTTTGTTGCAATTTTTGATGCAGACTTTCAACCAAATCCTGACTTTCTTAAGCAAACTGTGCCACATTTCAAGGACAATCCTGAACTCGGCTTGGTTCAAGCTAGATGGTCTTTTGTGAACAAGGACGAGAATTTGTTGACTCGTCTCCAAAACATTAATCTATGCTTCCATTTTGAGGTAGAACAACAGGTCAATGGGGTGTTTCTCAATTTTTTTGGTTTCAATGGAACTGCTGGTGTTTGGAGAATCAAGGCACTAGAAGAATCTGGGGGCTGGCTAGAGAGGACAACTGTAGAAGATATGGACATTGCTGTCCGCGCTCATCTAAATGGTTGGAAGTTTATCTTCCTAAATGATGTTAAGGTACCATGTGAAGTTCCTGAGTCATATGAAGCGTATAGGAAGCAGCAACATCGCTGGCATTCAGGTCCTATGCAACTTTTTAGGTTGTGTCTTCCAGCAATTGTGAGATCTAAGGTATATCTGATACTCAGCTTGAAGTAA 1461 0.4216 MAPRLDFSNWWTKDTQKGTPVVVKMENPNFSVVEINGADAAFRPVEKSRGKNAKQVTWVLLLRAHRAVGCVTWLATVLWALLGAIKKRLIHGEGESESDKLEKGKLLFRVIRVFLVTSLAVLAFEVVAYLQGWHFGNPTNLHIPRTSDFEGLLHLAYVAWLTFRAEYIAPPIQALSKFCVVLFLIQSVDRMLLCLGCFWIKYRKVKPKIDGDPLEIDDVEGSASNYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQWLIKTEVSKWSQKGINIIYRHRLIRTGYKAGNLNSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVPCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIVRSKVYLILSLK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01478 486 Pfam Glycosyl transferase family group 2 321 466 IPR001173 -
Cca03g01478 486 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 446 IPR029044 -
Cca03g01478 486 PANTHER - 1 480 - -
Cca03g01478 486 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 480 - -
Cca03g01478 486 SUPERFAMILY Nucleotide-diphospho-sugar transferases 226 484 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01478 Cca-Chr3 33256589 33260600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01478 1 479 Miscellaneous Gene Families AT4G31590 79.668 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01478 - - gmx:100790397 936.791