Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01473 ATGGCAGGGTTAAATTTTGAAGCCACATATACTGACAACCATGATATTCTGAAGATATTTGCAGATGAGGGTGTTGAGTTCCTTTTATCTAGTGAAGGGAAGGTACCCGTGTCAGAATGCTATGGGAAAATCATCTGCCTATTTTTCTCTGCAAACTGGTGCAGGCCATGCAGAGCTTTCACTCCCCATCTTGTTGAACTTTATGAAACACTGAGAAAGAGGGGGGAAAATCTAGAGATCATCTTCATCTCCTTTGACCGTGAAGAGGATGGATTTACTGAACACTTCAAGCGCATGCCATGGCTAGCTGTCCCATTTGATGTAAATTTGCACAGAAAATTTATTGACAGATACCGAGTCGATCGAATCCCATCATTCGTACCATTATGCTCAGATGCCATAACTGTTGAAGAAGACTTGATTGGATGCATTGAGGATTATGGTGCTGATGCATTTCCGTTCACAAGGAAGAGACATGATGAATTGAAAGCTATAGATCAAAGGAAACGCGAGGAAGCAAGCTTGGAAGAGTTATTGGGAAACGAAGGACGCAACTTTCTCATATCTGGAGATGATACAAAGGTACCCATATCTGAACTAACTGGTAAAACCATAGGCCTATATTTTGGTGCATATTGGTCTCCACCTTGTTGTGCCTTCACTATCCAACTTACAGATACATACAACAACCTCAAGGCTGCAAAAGGTGACTGCTTCGAGATCGTTTTGATCTCAACAGATAGGGACCTTATGGAATTCAATGTCAACAGAAGTAGTATGCCATGGCTTGCTGTCCCATATGAGGACAGGACAAGGCATGACCTTAGAAGAATCTTTGATGGCAAAGTCATTAGTGTAAATGGGAAGTTTATGGTCTCCTCATATGGTGCAGAAGCTTTCCCATTTACTGAATCAAGGATAAGAGAACTTGAAGCAGCTCTGAGAAAGGAGGGAGAGGCTTTGCCTCAACAGGTTGAGGATGTGAAGCATGAACATGTGCTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCCTGTAAAAAGCAAGGGAAATTCTGGACATTCTCTTGTGATGTCTGTGACTATGACCTTCACCCAAGTTGTCTAGAAAAGGTCAACGAGGACTTAAGTTGA 1137 0.4195 MAGLNFEATYTDNHDILKIFADEGVEFLLSSEGKVPVSECYGKIICLFFSANWCRPCRAFTPHLVELYETLRKRGENLEIIFISFDREEDGFTEHFKRMPWLAVPFDVNLHRKFIDRYRVDRIPSFVPLCSDAITVEEDLIGCIEDYGADAFPFTRKRHDELKAIDQRKREEASLEELLGNEGRNFLISGDDTKVPISELTGKTIGLYFGAYWSPPCCAFTIQLTDTYNNLKAAKGDCFEIVLISTDRDLMEFNVNRSSMPWLAVPYEDRTRHDLRRIFDGKVISVNGKFMVSSYGAEAFPFTESRIRELEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSCKKQGKFWTFSCDVCDYDLHPSCLEKVNEDLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01473 378 Pfam C1 domain 329 369 IPR004146 -
Cca03g01473 378 Gene3D Glutaredoxin 22 158 - -
Cca03g01473 378 Gene3D Glutaredoxin 180 303 - -
Cca03g01473 378 SUPERFAMILY Thioredoxin-like 32 128 IPR036249 -
Cca03g01473 378 SUPERFAMILY Cysteine-rich domain 321 370 IPR046349 -
Cca03g01473 378 PANTHER NUCLEOREDOXIN 3-RELATED 1 372 - -
Cca03g01473 378 Pfam Thioredoxin-like 202 280 IPR012336 -
Cca03g01473 378 Pfam Thioredoxin-like 42 127 IPR012336 -
Cca03g01473 378 ProSiteProfiles Thioredoxin domain profile. 177 312 IPR013766 -
Cca03g01473 378 SUPERFAMILY Thioredoxin-like 187 296 IPR036249 -
Cca03g01473 378 PANTHER THIOREDOXIN 1 372 - -
Cca03g01473 378 ProSiteProfiles Thioredoxin domain profile. 14 170 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01473 Cca-Chr3 33203018 33204912 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01473 K17609 - gmx:100778160 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01473 03 33203018 33204912 Cca03g01473 03 33203018 33204912 ECH