Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01469 ATGGATCAGAAGGTGGATCTCAGTGCTCCCCATTCTATGGGGACCACTATCATCGGCGTTACTTACAACGGCGGCGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGGAGTGTATGTTGCCAACCGGGCTTCGGACAAAATCACACAGCTCACTGATAATGTTTACGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAAATTGTTTCTGACTATGTGCGCTACTTCCTCCATCAACACACGATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCGGCTTCTGTCATATAACAACAAGAATTTCTTAGAGACTGGGTTAATCGTTGGTGGTTGGGATAAATATGAAGGTGGACAAATTTTTGGAGTTCCTCTGGGTGGAACAATAGTGCAGCAACCTTTTGCTATCGGAGGATCGGGCTCCAGTTACTTGTATGGTTTTTTTGACCAAGCCTGGAAAGAGGGAATGACCAAAGATGAAGCTGAGGATTTAGTAAAGAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTCCGAACAGTCATTATAAACTCTGAGGGAGTGACCAGGAATTTCTACCCTGGTGACCAACTTCCACTATGGCATGAGGAAATGGAGCCTCATAACTCTTTGCTAGACATTCTGGGTGCCCCAGAGCCGATGAGCATGTGA 702 0.4758 MDQKVDLSAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIFGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEEMEPHNSLLDILGAPEPMSM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01469 233 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 7 228 - -
Cca03g01469 233 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Cca03g01469 233 CDD proteasome_beta_type_6 15 202 - -
Cca03g01469 233 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Cca03g01469 233 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cca03g01469 233 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cca03g01469 233 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cca03g01469 233 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cca03g01469 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Cca03g01469 233 PANTHER PROTEASOME SUBUNIT BETA 7 228 - -
Cca03g01469 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 206 IPR029055 -
Cca03g01469 233 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01469 Cca-Chr3 33163925 33168007 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01469 K02738 - gmx:100793551 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01469 03 33163925 33168007 Cca03g01469 03 33163925 33168007 ECH