Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01463 ATGGAATGGAAGAAGTGTTATTTGGATGTGATATTGGTGCCCTTAGGATTTCTTTTGAGTATTGCTTACCATTTATGGCTGTGGCACACTGTTCGAACTCATCCTCACAAAACTATCATTGGCATCAATGCTACTGGTCGACGGAATTGGGTTGCAGCGATGATCAAGGACAATGACAAAAAGAACATCCTCGCTGTTCAGTCACTTCGAAACACAATCATGGGTGCGACCCTAATGGCCACAACCTCAATTCTCCTATGCTCAGGCCTTGCAGCAATCGTAAGCAGCAGCTACAGTGTGAAAAAGCCACTTGAGGACACTGTTTATGGGGGTCATGGGGAGTTCATGGTGTCACTCAAATATGTCACTCTTCTCTCTATTTTCCTCTTCTCTTTCTTTTGCCACTCCTTGTCCATAAGGTTCATAAACCAAGTTAACATCCTAATCAATACCCCCCAGGACCCCATGTCCTTGGTGACCCCTGAATATGTGAATGAGATATTGGAGAGAGGCTTCATTCTAAACACTGTTGGAAACAGACTCTTCTATGCAGCACTTCCTCTCCTGCTATGGATATTTGGCCCCGTCTTGGTCTTCTTGTGCTTTCTCACTATGGTTCCTGTGCTCTACAATCTTGACTTTGTGGTTACCAGTGCTAAGGgaaagatggatgagaatgagaatagagattttACTATCGTAAGCTTCTTCAAGGAAGGAGATTCACTGCACCCTACTTTAACTGACGTAATAGTATTCACATCTACTCCAGACAAAGTTAACAACAAATATTACTTGGGACCTGCCCCTCTGGATGACATGGCCTGGCAAATAGCAACTGCTTATGGTCCTTGCGGAAACAACAGAGACTACCTTTTCCTTCTAgccGGTTTCCACCCTTCCACTTTTCCCAAACCAACCGCACTTCCAAATTCCACCATACTCCGCTTCTGCCACCAAACAATTCTCTCCAACAAGGGGTATCTCAAAGCAGGAGCAATGTCTTCCTCTCATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAATGGAAGCCAAAGACCCATCCGAGACCATCTCCATTCTTTATCGGATACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACAAACCTCACTCAGCATCTCACGGCAGAGAATAGGGGAGAGGATCTGCGCAGTCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCCAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCGGTTGCTAAAATTCCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAACAAGGAGTATTCAGAAGCTTTAACTCTTCTTTCTGGCTTGGTCAAAGAGGTGAGGAGATTAGATGACAAACTTCTTCTTGTAGACATAGATTTGCTGGAAAGCAAGCTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCGCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAGGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGACGATCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAACCAAGCTGATGATGTAGGTGGAATTATTTCTTCTAAAGCAGGCCTGAAATTTGTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGCGTGACTTCAAGGCACAATTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCCTGTACGATACCCTTCTGGAGCAGAATCTTTGCAGATTGATTGAGCCCTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAGCTTCCTATTGATCACGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAAAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCTAAGACTGATGCTATATATCCTGCAACTCTGGAGACCATTTCCAATATTGGGAAGGTTGTGGACAGTCTTTACGTTAGGTCTGCCAAGATAATGGCATGA 2268 0.4361 MEWKKCYLDVILVPLGFLLSIAYHLWLWHTVRTHPHKTIIGINATGRRNWVAAMIKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAIVSSSYSVKKPLEDTVYGGHGEFMVSLKYVTLLSIFLFSFFCHSLSIRFINQVNILINTPQDPMSLVTPEYVNEILERGFILNTVGNRLFYAALPLLLWIFGPVLVFLCFLTMVPVLYNLDFVVTSAKGKMDENENRDFTIVSFFKEGDSLHPTLTDVIVFTSTPDKVNNKYYLGPAPLDDMAWQIATAYGPCGNNRDYLFLLAGFHPSTFPKPTALPNSTILRFCHQTILSNKGYLKAGAMSSSHLPATTESLALAMEAKDPSETISILYRILDDPSSSPDALRMKEQAITNLTQHLTAENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLKFVGPDLDAMKAVADAHSKRSLKLFEIALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01463 755 SUPERFAMILY TPR-like 464 655 IPR011990 GO:0005515
Cca03g01463 755 Coils Coil 459 479 - -
Cca03g01463 755 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 334 755 - -
Cca03g01463 755 ProSiteProfiles PCI domain profile. 556 724 IPR000717 -
Cca03g01463 755 SUPERFAMILY "Winged helix" DNA-binding domain 647 729 IPR036390 -
Cca03g01463 755 PANTHER - 334 755 - -
Cca03g01463 755 SMART PINT_4 653 736 IPR000717 -
Cca03g01463 755 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 349 461 IPR040773 -
Cca03g01463 755 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 726 751 IPR040780 -
Cca03g01463 755 Pfam Protein of unknown function, DUF599 11 215 IPR006747 -
Cca03g01463 755 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 653 736 - -
Cca03g01463 755 Pfam PCI domain 618 719 IPR000717 -
Cca03g01463 755 Gene3D - 379 754 - -
Cca03g01463 755 Pfam ChaC-like protein 233 297 IPR006840 GO:0003839|GO:0006751
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01463 Cca-Chr3 33107751 33122901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01463 K03036 - gmx:100796188 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01463 03 33107751 33122901 Cca03g01463 03 33107751 33122901 ECH