Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01461 ATGGGTATAGCAGAAGCATGCTCCAGATTCCTGGTAGACTTTTTACAAGCATTAAAAGCCTCCCTTCCAATAAGCTCAGTGTCTCACCTTGATCATCACAATCACCACCCTACATGCAAGCCAGAGAATATGGTGAAAATTGATGACAAGATGGTAAGTGCCCTTGTCACAGTTTTTGGCATGGAAACCAATGGGAGAATCAAGAAGGAGAATGCTAGGCAAGTGGTGGAGAAGCTTGGTTTGATGTGTGGTTGTGAGGGTGAAAATGAGGATAAGACTTCATCAGGGTTTGAGCTAGGTGGTGAGGGTGGCTTGATGGATGATGATGAAGTGCCTGTGGAAGATGTGCTTGGTGAGTTGGAGGACGTGTCAAAGCGCAGTGAGCTGTTGCATGAGGCCTTCAAGATCTTTGATGAGGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTCATTGCTTGGGATTGGATAAGGGTTGGGACATGAGTGCTATTGAGAACATGGTCAAGGTTGCTGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGGTAG 582 0.4519 MGIAEACSRFLVDFLQALKASLPISSVSHLDHHNHHPTCKPENMVKIDDKMVSALVTVFGMETNGRIKKENARQVVEKLGLMCGCEGENEDKTSSGFELGGEGGLMDDDEVPVEDVLGELEDVSKRSELLHEAFKIFDEDGDGYIDAMELKRVLHCLGLDKGWDMSAIENMVKVADLNFDGKVDFGEFELMMG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01461 193 PANTHER CALCIUM-BINDING PROTEIN CML42 115 192 - -
Cca03g01461 193 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Cca03g01461 193 Gene3D - 39 193 - -
Cca03g01461 193 ProSiteProfiles EF-hand calcium-binding domain profile. 163 193 IPR002048 GO:0005509
Cca03g01461 193 SMART efh_1 129 157 IPR002048 GO:0005509
Cca03g01461 193 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Cca03g01461 193 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 115 192 - -
Cca03g01461 193 SUPERFAMILY EF-hand 46 192 IPR011992 -
Cca03g01461 193 CDD EFh 130 188 IPR002048 GO:0005509
Cca03g01461 193 Pfam EF-hand domain pair 129 192 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01461 Cca-Chr3 33091440 33092307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01461 130 192 EF-hand Containing Proteins AT4G20780 55.556 4.06e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01461 - - gmx:100527700 276.559