Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01456 ATGTTGGATCTCTGTGACAACTTGGGTCACGTTGTTTACGCCACCTTGCTGTTCCAACAACTACAAAACCCCAACGTGTTCTCTTACAATGCAATCATCAGAACTTACACCTATAATCAGAAACATTCCCTAGCAATTGGTATTTTCAACCAAATGCTCACATATGCAACAAAATCAACGTTACCAGACATGTTCACGTTCCCGTTTGGGATAAAATCGTGCGCGGGTCTTCTTTGCCTTCGTCTTGGGCAACAAGTTCACGCGCACTTGTGCAAATTTGGCACCAAGTCGCATGCAATAACGGATAACGCTCTGATTGATATGTACACAAAGTGTAGCGATAtgagtgGATGTTATGTTAATGCTTTGGAGATTTTCCGTGAGATGCAAGTGGTGGGTATTGAGCCTGACGAGATCAGTGTTATATCTGTTCTACCCGCGTGTGCGCAGCTTGGGGCTCTTGAGGTTGGGAAGTGGATTCACAAGTACTTGGAGAAAAGTGGGTTTTTGAAGAAGACTGGTGTGTGTAATGCACTGATTGATATGTATGCCAAGTGTGGTTGCATTGAAGAGGCTCGGCGCTTGTTTAATGAGTTGGTTGAAAAGGATGTGATTTCTTGGAGCACCATGATTGGGGGACTGACTAATCATGGAAAAGGCGTGTGCTCTGCTCATGCAGGGTTGTGGAATGAGGGGTTGAGATATTTTGGTATTATGAGGGTGGATTATCGTTTAGAGCCAGAGATTGAGCACTATGGTTGTCTAGTTGATCTTCTACGCCGCTCCAGACGGCTTGATCAGGCTCTTGACACAATATGGAAGATGCCGATGCAAACAGATTCGAGGATATGGAACTCTTTATTGAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCTGTTGTTGCAATGGAACATCTTTTAGAACTTGAGCCTGAAGAGTTTGGGAACTATGTCTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAGGGTGTATTGAATGTTAGGAAACTCATACGAAGCATCAGATAA 1038 0.4364 MLDLCDNLGHVVYATLLFQQLQNPNVFSYNAIIRTYTYNQKHSLAIGIFNQMLTYATKSTLPDMFTFPFGIKSCAGLLCLRLGQQVHAHLCKFGTKSHAITDNALIDMYTKCSDMSGCYVNALEIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYLEKSGFLKKTGVCNALIDMYAKCGCIEEARRLFNELVEKDVISWSTMIGGLTNHGKGVCSAHAGLWNEGLRYFGIMRVDYRLEPEIEHYGCLVDLLRRSRRLDQALDTIWKMPMQTDSRIWNSLLSSCRIHRNLEIAVVAMEHLLELEPEEFGNYVLLANIYAELGKWEGVLNVRKLIRSIR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01456 345 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 117 - -
Cca03g01456 345 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 223 343 - -
Cca03g01456 345 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 117 219 - -
Cca03g01456 345 SUPERFAMILY TPR-like 174 336 IPR011990 GO:0005515
Cca03g01456 345 PANTHER OS05G0439300 PROTEIN 117 219 - -
Cca03g01456 345 PANTHER OS05G0439300 PROTEIN 223 343 - -
Cca03g01456 345 Gene3D Tetratricopeptide repeat domain 221 343 IPR011990 GO:0005515
Cca03g01456 345 Gene3D Tetratricopeptide repeat domain 1 117 IPR011990 GO:0005515
Cca03g01456 345 Gene3D Tetratricopeptide repeat domain 118 220 IPR011990 GO:0005515
Cca03g01456 345 Pfam E motif 294 342 IPR046848 -
Cca03g01456 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Cca03g01456 345 TIGRFAM PPR: pentatricopeptide repeat domain 175 204 IPR002885 -
Cca03g01456 345 PANTHER OS05G0439300 PROTEIN 1 117 - -
Cca03g01456 345 Pfam PPR repeat 176 203 IPR002885 -
Cca03g01456 345 Pfam PPR repeat 27 53 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01456 Cca-Chr3 33039962 33041257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01456 1 342 Glycoside Hydrolase AT3G49170 31.486 1.16e-58 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01456 - - gmx:100806006 506.908