Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01455 ATGAATGAGGGTCGACTATTGAGTAAGATTCTGAACAAGTGTTCGAACCGTCGTTTGCTTGATCAAGGAAAGCAGGTACATGGGGTTGTGGAGAAACTAAGACTTGGGCGTGATTTGATTCTGAACAATGATCTTATAGATATGTACGCAAAATGTGGTACCGTGGATTTCGCTTGTAAGGTGTTTGATCGAATGCCTCAAAGAAATGTAGTGTCTTGGACGGCTCTAATGTGTGGGTATCTGCAAAATGGTGATGCCAAAACCTCTTTGGTTTTGTTTGTTAAAATGGGTCGTACAAATGTTACGCCGAACGAGTTCACGCTTTCCACAAGTCTAAAAGCATCTGGGGTTTTGGGGATCCCTAAGAACGGAATGCAGATTCACGGGGTTTGTGCAAAATCTTGTTTTGATAGGGTACCAGTTGTGGGTAATTCCATGATTGACATGTACTCCAAGTGTGGTATGGTTAGTGAGGCAGCAAAAGTGTTCAACACTTTGCCAGTGAGAAATGTTATAAGCTGGAATGCAATGATTGCTGTGTACACCCATGAAGGAAATGGTGAAATGGCTTTGAATCTATTTCGAGAAATGCAACAGAATCGGGACGTTCCTGATGGGTATACATATTCAAGCTCGTTAAAGGCTTGTAGTGGTGCTAGTGCGGTAGGAGAAGGAATGCAAATTCATGCTGCATTGATCAGACATGGATTTCCTTACTTGGCTCAACCAGCTGTTGCAGGTGCTTTGGTTGATCTGTATGTCAAATGCAGGCGCGTGGCTGAAGCTAGGAGGGTGTTCGATCGAATTGAAGAGAAAAGTGTGATGTCTTGGAGCACACTAATTCTTGGTTATGCACACGAAGATGATTTGGCAGAGGCCATGGATTTGTTTAGGGAGTTGAGAGAGAGCAGACAAAGAATGGATGGGTTTGTACTCTCGAGTCTCATAGGTGTCTTTGCTGATTTGGCCCTTGTGGAGCAAGGGAAGCAAATGCATGGTTATACCATCAAAGTCCCGTATGGTTTATTGGAAATGTCTGTGGCTAATTCAGTTTTGGATATGTACATGAAATGTGGACTAACAGATGAGGCAGATGCACTTTTCAGAGAGATGCCAGCAAGAAATGTGGTTTCATGGACTGTTATGATCACTGGTTATGGGAAACATGGTATGGGGAATAAGGCAGTTGAGCTTTTCAACGGAATGCAAGTGAATGGAATTGAGCCTGATAGTGTAACTTATTTGGCTGTGCTCTCAGCTTGCAGCCACTCTGGACTCGTAAAAAAAGGTCAAAAATTCTTCTCTAGTTTATGTAGCAATAAGCTGATCAAACCGCAAGTTGAGCATTATGCTTGCATGGTTGATCTTCTTGGACGAGCTGGACGCTTAAAGGAAGCAAAGGATCTCATTGAGAAAATGCCCCTAAAGCCAAATGTGGGCATATGGCAGACATTGCTTAGTGTTTGTAGAATGCATGGAGATGTGGAATTGGGGAAGCAAGTGGGAGAGGTACTTTTGAGATTGGATGGTAATAATCCAGCCAACTATGTCTTGATGTCAAACATTTATGCTGACGCCGGGTATTGGAAAGAGAGTGAAAAAATGAGAGAAATTTCGAAGAGAAAGGGATTGAAGAAAGAGGCAGGACGTAGTTGGGTGGAGATAGCCAAGGAAATTCACATTTTCTACAATGGAGATGGCATGCATCCTCTAATAGGGGAAATTCTCCAAGTGTTGAAAGAAATGGAAAAGAGGGTGAAGGAAGAAATGGGCTACGTTCATAGTGTAAATTTTGCATTGCATGATGTTGAAGAGGAGTCAAAGGTTGAGAGTTTGAGGATTCATAGCGAGAAATTGGCTATTGGGTTGGTTTTGGTTAGAGGTGGGCTTAAAGCAGAAAGGGTGATTAGGATTTTCAAGAACTTGAGGGTTTGTGGGGATTGTCATACATTCATCAAGGGTTTGTCAAAGGTATTGAAGATTGTATTTGTGGTGAGAGATGCAAATAGGTTTCACAGATTTGAGAACGGATTGTGTTCGTGTGGAGATTACTGGTGA 2058 0.4242 MNEGRLLSKILNKCSNRRLLDQGKQVHGVVEKLRLGRDLILNNDLIDMYAKCGTVDFACKVFDRMPQRNVVSWTALMCGYLQNGDAKTSLVLFVKMGRTNVTPNEFTLSTSLKASGVLGIPKNGMQIHGVCAKSCFDRVPVVGNSMIDMYSKCGMVSEAAKVFNTLPVRNVISWNAMIAVYTHEGNGEMALNLFREMQQNRDVPDGYTYSSSLKACSGASAVGEGMQIHAALIRHGFPYLAQPAVAGALVDLYVKCRRVAEARRVFDRIEEKSVMSWSTLILGYAHEDDLAEAMDLFRELRESRQRMDGFVLSSLIGVFADLALVEQGKQMHGYTIKVPYGLLEMSVANSVLDMYMKCGLTDEADALFREMPARNVVSWTVMITGYGKHGMGNKAVELFNGMQVNGIEPDSVTYLAVLSACSHSGLVKKGQKFFSSLCSNKLIKPQVEHYACMVDLLGRAGRLKEAKDLIEKMPLKPNVGIWQTLLSVCRMHGDVELGKQVGEVLLRLDGNNPANYVLMSNIYADAGYWKESEKMREISKRKGLKKEAGRSWVEIAKEIHIFYNGDGMHPLIGEILQVLKEMEKRVKEEMGYVHSVNFALHDVEEESKVESLRIHSEKLAIGLVLVRGGLKAERVIRIFKNLRVCGDCHTFIKGLSKVLKIVFVVRDANRFHRFENGLCSCGDYW 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01455 685 Pfam E motif 492 554 IPR046848 -
Cca03g01455 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Cca03g01455 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Cca03g01455 685 Pfam PPR repeat 276 303 IPR002885 -
Cca03g01455 685 Pfam PPR repeat 248 273 IPR002885 -
Cca03g01455 685 Pfam PPR repeat 144 166 IPR002885 -
Cca03g01455 685 Pfam PPR repeat 450 474 IPR002885 -
Cca03g01455 685 PANTHER - 1 643 - -
Cca03g01455 685 Pfam PPR repeat family 169 216 IPR002885 -
Cca03g01455 685 Pfam PPR repeat family 374 422 IPR002885 -
Cca03g01455 685 Pfam PPR repeat family 68 114 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 276 303 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 172 200 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 349 377 IPR002885 -
Cca03g01455 685 TIGRFAM PPR: pentatricopeptide repeat domain 450 473 IPR002885 -
Cca03g01455 685 Pfam DYW family of nucleic acid deaminases 591 685 IPR032867 GO:0008270
Cca03g01455 685 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 643 - -
Cca03g01455 685 Gene3D Tetratricopeptide repeat domain 3 117 IPR011990 GO:0005515
Cca03g01455 685 Gene3D Tetratricopeptide repeat domain 127 233 IPR011990 GO:0005515
Cca03g01455 685 Gene3D Tetratricopeptide repeat domain 343 440 IPR011990 GO:0005515
Cca03g01455 685 Gene3D Tetratricopeptide repeat domain 441 561 IPR011990 GO:0005515
Cca03g01455 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cca03g01455 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01455 Cca-Chr3 33037646 33039827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01455 8 685 Glycoside Hydrolase AT3G49170 38.261 6.45e-155 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01455 - - gmx:100806657 1206.05