Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01448 ATGGACTATTGTCTGCGAGAAATAGAGGGAAAGCAAGCGCATGACCCGTTGTTCATGTCATCCTACTCCACCGTCTGGCTTCATGGGCCTCTCATAGTAGGAGCTGGGCCTTCTGGGCTTGCAGTGGCGGCGTGCCTCAAACAAAAAACCATCCCAACCCTCATTCTAGAGAGATCCAACTGCATAGCTTCTCTGTGGCAGCTTAAAACCTATGATCGCTTACGCCTCCATTTGCCAAAGCAATTCTGCGAGCTACCCTTCGCGCCTTTTCCCTCGCACTTTCCAACCTACCCTTCCAAGCAACAGTTCGTGGACTACTTGGAGCGCTACGCGGAGAGGTTCGGTATAAGGCCCAAGTTCAATGAGACCGTCAAGCATGCAGAGTTTGATCAAAACCTTGGCTTCTGGCGCGTGAGGAGCGTCGACAAGGCGGAGAACGCCACCGTGTACATGTGCCGCTGGCTCATCGTGGCCACCGGCGAGAATGCGGAGGCGGCGGTGCCGGATATCCAAGGGGTAGGGGACTTTGGAAGGCCCATAAGGCACACCAGTTTGTATAAGAGTGGGGAAGAGTTCAGAGAGAAGAAGGTTTTGGTTGTGGGCTGTGGGAACTCGGGGATGGAAGTTTGCTTGGATCTTTGCAACCATAATGCTACTCCTTCACTTGTCGTCAGAGACACTGTACATGTTCTACCACGAGAGATGCTGGGAAAATCAACTTTCGGGTTGTCCATGTGGTTGCTGAAGTGGTTACCCATACGACTTGTCGATGCGTTTCTGCTAATGGTGTCATGGCTGATGCTCGGTGACACTGCTCGATTCGGATTGGATCGGCCGCGTTTGGGTCCCCTTGAACTCAAAAACATGTCAGGAAAGACCCCTGTGCTAGATGTGGGTACCCTTGCCAAGATTAAAGGTGGAGACATTAAGGTACGTCCAGGCATTAAGCGGCTTAAACGTCATACAGTGGAATTTGTGGACGGAAGGACAGAGAATTATGATGCAATCATATTGGCAACTGGTTACAAAAGTAATGTACCCTATTGGCTTAAGGAAGAAGATATGTTCTCTAAGCAAGATGGGTACCCAAGAAAACCATTTCCAAATGGGTGGAAAGGTAAAAATGGTCTCTATGCAGTGGGTTTTACCAAAAAGGGACTACTTGGTGCATCCATGGATGCAAAGAGAATAGCTGAAGACATTGAACAGTGTTGGGAAGCTGAAGCAAACCATACAAGTGCTTTTGCTCGCTCACACTTGCCGCAACCAAATTCATAA 1278 0.4945 MDYCLREIEGKQAHDPLFMSSYSTVWLHGPLIVGAGPSGLAVAACLKQKTIPTLILERSNCIASLWQLKTYDRLRLHLPKQFCELPFAPFPSHFPTYPSKQQFVDYLERYAERFGIRPKFNETVKHAEFDQNLGFWRVRSVDKAENATVYMCRWLIVATGENAEAAVPDIQGVGDFGRPIRHTSLYKSGEEFREKKVLVVGCGNSGMEVCLDLCNHNATPSLVVRDTVHVLPREMLGKSTFGLSMWLLKWLPIRLVDAFLLMVSWLMLGDTARFGLDRPRLGPLELKNMSGKTPVLDVGTLAKIKGGDIKVRPGIKRLKRHTVEFVDGRTENYDAIILATGYKSNVPYWLKEEDMFSKQDGYPRKPFPNGWKGKNGLYAVGFTKKGLLGASMDAKRIAEDIEQCWEAEANHTSAFARSHLPQPNS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01448 425 Gene3D - 30 410 IPR036188 -
Cca03g01448 425 PRINTS Pyridine nucleotide disulphide reductase class-II signature 29 51 - -
Cca03g01448 425 PRINTS Pyridine nucleotide disulphide reductase class-II signature 192 216 - -
Cca03g01448 425 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 19 413 - -
Cca03g01448 425 Pfam Flavin-binding monooxygenase-like 32 349 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca03g01448 425 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 19 413 - -
Cca03g01448 425 PRINTS FAD-dependent pyridine nucleotide reductase signature 30 49 - -
Cca03g01448 425 PRINTS FAD-dependent pyridine nucleotide reductase signature 196 214 - -
Cca03g01448 425 SUPERFAMILY FAD/NAD(P)-binding domain 194 408 IPR036188 -
Cca03g01448 425 SUPERFAMILY FAD/NAD(P)-binding domain 31 229 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01448 Cca-Chr3 32912062 32916427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01448 K11816 - gmx:100799546 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01448 03 32912062 32916427 Cca03g01448 03 32912062 32916427 ECH