Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01447 ATGGGTTACATCCGCTATGGAAGACACAGTCTCAGACACATATTCAGATTCAAAACCGCGACCGGTGTGGTCACGAATTCCGCGAGATCGCAATCATCGCCAACTTTGCCTCCATTGCCCTCCCATTCGCATTCCCGTTTCCTCGGTAACGCTCTCTTCTCCGCCACCTCCGAGGCGCGAATCGTGCAGGACCTCCTCGCCGAGGTGGAGCGCGACCGCCTCCGGGAGCGGAACGAGCGGCTGCGCCTGGGCCTAGACACCGCCGACATCGACGCCGAGCCCTCGCACGACTACATGGGCGTGGGCCCCCTCATCGAGAAGCTCGAGAAGGAGAAGCTCAAGGATTCCCCCGACCTCCGCCGCTACGAGGAGCCCACcgactccgacgacgactccgacgaggacaccatggaggacgtcgacAAGCGCCAAAGCGACTTCGAGCGCAAGTTCGAGCGCCACCAGGACCTCCTCCAGAGCTTCACCGACGCCGAAACCCTAGACGACGCCTTCAAGTGGATGGCCAAAATCGACAAATTCGAGCACAAGCACTTCCGCCTCCGCCCCGAGTATCGTGTCATTGGCGAGCTCCTGAACCGCCTCAAGGTCGCCACTGAAATCAAGGACAAGTTTGTTCTTCAGAACAAGCTTAATAGGGCGTTGAGGCTGGTAAGGTGGAAGGAGGCTTATGATCCTGATAACCCTGCCAATTATGGTGTCATTCAGGGGGAGCAGCCGGATGCTGCGGCTCCCGCCGATGCGAAGGAAGAGGCTGAGTTGGAGAAGGAGAAACTGATTGGGGAAGGAGATGGTGGTGGTGAGAAGGAGGAGGAGGAGGAGTTTGATGACATGAAGGAGAAGGATAATATACTGCTGGCCAAGCTTGATGCTATTGATAGGAAGCTTGAGGAGAAGTTGGCGGAGCTCGAGTATACGTTTGGGAGGAAGGGGAAGGCCCTCGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAACGAGTTGACTGAGAAGAAACGGAAGCCGCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACCAAGGGAGGACAAGTTGTTAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCCGTTGCCCTTCAGAAGGCGTACGAGAAATGCTTTCAGAATTTGCATTACGTTGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCTTATAAAAAGACCAAGGTGTATCTGTGGCCTGCTCGTACTACAACTGGCATGAAAGCTGGCAGAACAGTCGAATCCATTCTGCATTTAGCTGGTTTAAAGAATGTCAAGTCGAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCCGTCTTCAAAGCACTTAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGA 1515 0.5083 MGYIRYGRHSLRHIFRFKTATGVVTNSARSQSSPTLPPLPSHSHSRFLGNALFSATSEARIVQDLLAEVERDRLRERNERLRLGLDTADIDAEPSHDYMGVGPLIEKLEKEKLKDSPDLRRYEEPTDSDDDSDEDTMEDVDKRQSDFERKFERHQDLLQSFTDAETLDDAFKWMAKIDKFEHKHFRLRPEYRVIGELLNRLKVATEIKDKFVLQNKLNRALRLVRWKEAYDPDNPANYGVIQGEQPDAAAPADAKEEAELEKEKLIGEGDGGGEKEEEEEFDDMKEKDNILLAKLDAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEKKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPARTTTGMKAGRTVESILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01447 504 ProSiteProfiles S5 double stranded RNA-binding domain profile. 347 410 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01447 504 PANTHER RIBOSOMAL S SUBUNIT 60 504 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01447 504 Gene3D - 298 408 - -
Cca03g01447 504 SUPERFAMILY Ribosomal protein S5 domain 2-like 416 494 IPR020568 -
Cca03g01447 504 MobiDBLite consensus disorder prediction 250 271 - -
Cca03g01447 504 SUPERFAMILY dsRNA-binding domain-like 342 412 - -
Cca03g01447 504 Gene3D - 412 501 IPR014721 -
Cca03g01447 504 PANTHER 28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL 60 504 - -
Cca03g01447 504 MobiDBLite consensus disorder prediction 115 142 - -
Cca03g01447 504 Pfam Ribosomal protein S5, C-terminal domain 426 493 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cca03g01447 504 Pfam Ribosomal protein S5, N-terminal domain 347 411 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01447 504 Coils Coil 292 312 - -
Cca03g01447 504 Coils Coil 317 340 - -
Cca03g01447 504 MobiDBLite consensus disorder prediction 240 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01447 Cca-Chr3 32885785 32890916 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01447 K02988 - gmx:100809192 743.036