Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01446 ATGGTCCTTCTTCACCTGCCGAGGTTCCCTCTCTACTTCCTCACCTCATATCGCTTCGCCTTCTCCACTTCCTCCAGAACCACCCTCTTACGCCCTCCCAAGTCCATCCTCACCACTTCAGAACCCGCACCCGCCGCAACCCCTTCCCCCGAAGACCTATCCTTATCCCTATCCCTCGAGAACCTCTTCGTTCCGCCGGAGACTACCGTGTCCGTCGACACTGCCAGGATCTTGAACGGTTCCAACATTCTGCTCAGTAGCTACGCCAACGATGCTCAGGTCTCGCAGGCCGAATTCGTCAAGAGCAGTGTCAGAACCGAGGACTGCCCCTCCGATGGCCTCCCTGAGTTCGCCCTCGTTGGCCGCTCCAATGTCGGCAAATCCTCGCTCCTCAACTCCATCGTGCGCCGCAAGAAGCTCGCCTTGACTTCGAAGAAGCCTGGAAAAACGCAATGCATAAACCATTTTCGGATTAATGATAGCTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCCCCACATGAACTTCGAATGGATTGGGAACAATTCACCAAGGACTATTTCCTTAACCGGTCAACATTAGTATCGGTATTCCTCCTAATAGATGCTAGCATTCCTGCTNNNNNNNNNNAAAAAATTGATCTTGATTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTGATCTTCACTAAATGTGACAAGCGGAAGAAGAAAAAGAATGGAGGCAAAAGACCAGAAGAAAATGTCAATGATTTTCAGGAATTGATTCGAGGTTTCTTCCAATCAGTGCCTCCATGGATCATGACCAGTAGTGTCACCAATCAGGGTCGTGATGAGATACTTCTCCATATGGCACAGCTTCGTAACTACTGGCTCAAGCACTAG 903 0.4939 MVLLHLPRFPLYFLTSYRFAFSTSSRTTLLRPPKSILTTSEPAPAATPSPEDLSLSLSLENLFVPPETTVSVDTARILNGSNILLSSYANDAQVSQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYASAPHELRMDWEQFTKDYFLNRSTLVSVFLLIDASIPAXXXXKIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEENVNDFQELIRGFFQSVPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01446 300 Gene3D - 88 296 IPR027417 -
Cca03g01446 300 Pfam 50S ribosome-binding GTPase 117 237 IPR006073 GO:0005525
Cca03g01446 300 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 55 297 - -
Cca03g01446 300 MobiDBLite consensus disorder prediction 32 51 - -
Cca03g01446 300 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 113 296 IPR030393 GO:0005525
Cca03g01446 300 CDD YihA_EngB 116 293 IPR030393 GO:0005525
Cca03g01446 300 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 55 297 - -
Cca03g01446 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 296 IPR027417 -
Cca03g01446 300 Hamap Probable GTP-binding protein EngB [engB]. 102 294 IPR019987 GO:0005525
Cca03g01446 300 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 97 288 IPR019987 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01446 Cca-Chr3 32879666 32883582 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01446 K03978 - gmx:100784426 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01446 03 32879666 32883582 Cca03g01446 03 32879666 32883582 ECH