Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01445 ATGGCTCCGCCACCACCGCAGTCCAATCGATCCCCCTCGCCGTCGCAACCGTCGGGGAAGAGTGAAGTCTCTGATCTGAAATCGCAGCTCCGGCAGCTTGCTGGGAGCCGAGCGCCGGGTGCCGATGATTCTAAGAGGGATCTCTTCAAGAAAGTTATTTCCAACATGACTATAGGTATTGATGTCTCGTCTCTCTTTGGTGAGATGGTAATGTGCTCCGCAACATCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCAAAGGGCAATCCTGATCTTGCACTGTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCTATGATTCGGGGGCTAGCGTTGAGGAGTTTGTGTTCGCTTCGAGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGATCTGGGTTGAAGGATAACAATAGTTATGTGAGGATGGTGGCAGTTATTGGGGTTTTAAAACTATATCATATATCTGCTTCCACCTGTATTGATGCAGATTTTCCGGCAACACTGAAGCATTTATTGCTTCATGACCCTGATACTCAGGTAGTCGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCTGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTTTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGCTGGAATTGGTGGCCAAGTACATTCCATCAGACAACAGTGAAATATTTGATGTTATGAACCTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTATCTATGGCTGATGTTCATCAGCAGGTATATGAGCGTATCAAAGCCCCTCTTTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCCTATGCAGTTTTAAGTCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCTGCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGGGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGTTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGCAATATCAGTAGCAAAAATGTCCAGGAACCCAAGGCTAAGGCAGCTCTTATTTGGATGCTGGGGGAATATTCTCAGGACATGCACGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAATTGGGATGAGGAACATTCTGCAGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCCCCTGAAACTCAAAAAGCATTAGGAGCTGTTTTGGCTGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCAGAGAATGTGGTCAGTCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACCCAGAGCAGTGAAATCAAAGATCGTATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCCGGAGAATCTGTTGTTCCAGCTCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAGGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGCCTATTATGCTCCTTCCCTTAATGGTTCATCCGCCCCTTCTGCAACTTCACAACCACTTGCAGATTTGGCATTTCCAACTACTGGCATATCTAGTCAAGCTCCAACTTCTAGCTTGGCAATCGATGATCTTCTTGGTTTAGGTTTTCCAGATGGAACTGCAGCTACGCCTTCACCTCCTCCATTGAACCTAAATTCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCTTCATCAGAGGAACATTCTTTAAGTCCTCAAGGAATCGCATCACTGACAACTCCCCATGCTCTCGTGCGGCACATGCGAAGTCATTTGATACACTGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAACATCAATATATCTTGTAGAGTGTATAATCAACACATCATCAACCAAGTCACAGATTAAAATAAAAGCTGACGACCAGAGTTCATCCCAGGCATTCTCAACATTGTTCCAATCAGCCTTGTCCAAATTTGGTTTATCTTGA 2538 0.4259 MAPPPPQSNRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLLLHDPDTQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVAKYIPSDNSEIFDVMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSADYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAVLAAGLADFHQDVHDRALFYYRLLQYNVSVAENVVSPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESGESVVPAQRVEANDKDLLLGTSEKDEGRDPGSNGSAYYAPSLNGSSAPSATSQPLADLAFPTTGISSQAPTSSLAIDDLLGLGFPDGTAATPSPPPLNLNSKAVLDPGTFQQKWRQLPISSSEEHSLSPQGIASLTTPHALVRHMRSHLIHCIASGGQSPNFKFFFFAQKAEATSIYLVECIINTSSTKSQIKIKADDQSSSQAFSTLFQSALSKFGLS 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01445 845 PIRSF Beta_adaptin 11 845 IPR016342 GO:0015031|GO:0030276
Cca03g01445 845 Gene3D - 712 843 IPR012295 -
Cca03g01445 845 MobiDBLite consensus disorder prediction 1 42 - -
Cca03g01445 845 MobiDBLite consensus disorder prediction 637 678 - -
Cca03g01445 845 Pfam Beta2-adaptin appendage, C-terminal sub-domain 727 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cca03g01445 845 SMART B2_adapt_app_C_2 723 840 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cca03g01445 845 Gene3D - 15 610 IPR011989 -
Cca03g01445 845 MobiDBLite consensus disorder prediction 642 656 - -
Cca03g01445 845 MobiDBLite consensus disorder prediction 13 31 - -
Cca03g01445 845 SUPERFAMILY ARM repeat 29 599 IPR016024 -
Cca03g01445 845 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 17 843 IPR026739 GO:0016192
Cca03g01445 845 Pfam Adaptin N terminal region 35 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cca03g01445 845 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 17 843 - -
Cca03g01445 845 MobiDBLite consensus disorder prediction 662 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01445 Cca-Chr3 32864724 32874907 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01445 - - gmx:100801153 1536.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01445 03 32864724 32874907 Cca03g01445 03 32864724 32874907 ECH