Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01438 ATGCGCCCACCGGTTATTCTCAAAACTACCtctctcttcgattcttcttattcttgttcttcACCCAGCGATCGCAGACTCAACACTCTCGCGAGGCATTTCGTTTGCGCTCACAATCCAATGGCTTCTCACGACGATATCTCCGCTTCGCCAACCGCAGCTTCCGATTCCGTCTTCGCTCAACTCGTTCGTGCGCCTGAAGATCCTATCCTCGGGGTGACCGTCGCTTATAACAAAGATCCAAGTCCAGTGAAGGTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTCTGAATGTAGTGAGGCGAGTTGAGCAGCAGCTCGTGAATGACGTGTCTCGCAACAAGGAATATATTCCCATTGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTCGGTGCTGACAGCCCTGCTATTCAAGAGAACAGGGTTACCACCGTTCAAGGCTTGTCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACATTATCACCAACGAACAATATACTTGCCAACACCAACTTGGGGCAATCACCCAAAGGTTTTCACCTTAGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTGAAGGACTTATGGAAGATCTTTCATCTGCTCCGTCTGGATCTATTGTTTTGCTACATGCTTGCGCACATAACCCCACTGGTGTTGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGCGGAAGTCTAGATGCAGATGCGCAGCCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTTGGCGCCTTAAGCATTGTATGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACGGGGATTTGTACAATGAGTGGACTATTGAGTTGAAGGCAATGGCTGACCGTATTATCAGTATGCGCCAACAACTTTTTGAGGCTTTACTTTCCAGAGGCACACCTGGTGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACAGGATTGAATACTGAACAAGTTTCCTTCATGACTAATGAGTACCATATATATATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACAGTGCCACATTTGGCGGATGCGATACATGCAGCTGTGACCCGAGGTGTCTGA 1380 0.4543 MRPPVILKTTSLFDSSYSCSSPSDRRLNTLARHFVCAHNPMASHDDISASPTAASDSVFAQLVRAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRVEQQLVNDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFTLAGLSVKTYRYYAPATRGLDFEGLMEDLSSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDGDLYNEWTIELKAMADRIISMRQQLFEALLSRGTPGDWSHIIKQIGMFTFTGLNTEQVSFMTNEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTRGV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01438 459 Gene3D Aspartate Aminotransferase, domain 1 64 451 IPR015422 GO:0003824
Cca03g01438 459 Gene3D - 118 359 IPR015421 GO:0003824
Cca03g01438 459 SUPERFAMILY PLP-dependent transferases 57 457 IPR015424 -
Cca03g01438 459 PRINTS Aspartate aminotransferase signature 233 252 IPR000796 GO:0006520|GO:0008483
Cca03g01438 459 PRINTS Aspartate aminotransferase signature 264 276 IPR000796 GO:0006520|GO:0008483
Cca03g01438 459 PRINTS Aspartate aminotransferase signature 332 357 IPR000796 GO:0006520|GO:0008483
Cca03g01438 459 PRINTS Aspartate aminotransferase signature 400 418 IPR000796 GO:0006520|GO:0008483
Cca03g01438 459 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 302 315 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cca03g01438 459 PANTHER ASPARTATE AMINOTRANSFERASE 56 457 - -
Cca03g01438 459 CDD AAT_like 86 439 - -
Cca03g01438 459 Pfam Aminotransferase class I and II 85 451 IPR004839 GO:0009058|GO:0030170
Cca03g01438 459 PANTHER ASPARTATE AMINOTRANSFERASE 56 457 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01438 Cca-Chr3 32792772 32798288 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01438 K14454 - gmx:547509 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01438 03 32792772 32798288 Cca03g01438 03 32792772 32798288 ECH