LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01436	ATGGCGAACCAGGACTTCGAAGAACGGCAGCAACCCGCGCAGGAGCTCGGGTACGACCCGAACTTCGTCCCGGACTCGGTGAAATCCTTCGTGGTCCACCTGTACCGCCACATCCGCGAGAAGAATGTGTACGAGATCCACCAGATGTACGAGAGCTCGTTCCAGACCCTCTCGGAGCGGCTCTTCAAGGACACCCCGTGGCCCTCGGTGGACGCGGTGGCGCACTACGTGGACAACGACCACGTCTTCTGCCTCCTCTACCGCGAGATGTGGTTCCGCCACCTGTACGCCCGCCTCACGCCCACCCTCCGCCAGCGCATCGACTCCTGGGACAACTACTGCAGCCTCTTCCAGGTCGTCCTCCACGGCGTCGTCAACATGCAGCTCCCCAACCAGTGGCTCTGGGACATGGTCGACGAGTTCGTCTACCAGTTCCAGAGCTTCTGCCAGTACCGCGCCAAGATGAAGACCAAGACCGAGCAGGAGATCGCGCTCCTCAGGCAGTTTGACCAGGCCTGGAATGTCTACGGGGTTTTGAATTTTCTCCAGGCGCTCGTGGAGAAGTCCACCATTATTCAGATTCTGGACCAGGAGAAGGAGGGGCTCGAACAGTTCACGGCCACGGATGGGTATGACTATAATGGGGGGAGTAATGTGCTTAAGGTGTTGGGGTATTTCAGCATGGTGGGGTTGCTCAGGGTTCATTGTTTGTTGGGGGATTATCACACTGGTCTCAAGTGCTTGCTTCCTATTGATATTAGTCAACAGGGGGTTTATACTAGTGTTATTGGTAGCCATATTACTACCATTTATCACTATGGTTTCGCCAATCTCATGCTCCGCAGATATGTGGAAGCTATACGTGAATTTAACAAAATTCTCTTGTACATCTTTAAGACAAAGCAGTATCATCAGAAATCACCACAGTATGAACAGATACTGAAGAAGAATGAACAAATGTATGCCTTGCTGGCAATTTGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTGATGAAACTGTGAACTCTCAGTTACGTGAGAAGTATGGTGAAAAGATGGCTAGAATGCAGAGATATGATGATGAGGCATTTGCTATCTATGATGAGCTTTTCTCGTATGCATGCCCCAAGTTCATTACCCCTTCAGCTCCTAGTTTTGAGGAGCCTCTAGTAAATTACAACCAGGATGCCTATAGACTTCAATTGAAATTGTTCCTTTATGAAGCAAAGCAACAACAATTGTTATCAGGTGTTCGGACCTTCCTGAAAGTGTATTCAACAATTTCCCTTGCAAAGCTTGCGAGTTACATGGAAGTGGATGAACCCACCTTAAGGACGATCTTGATGACATACAAGCACAAGACACATGCTGTTGACAGTGATGGAAAAATTATCTCCAATGCTGATTTGGATTTCTATGTTGATGATGAGGTAATTCATGTTATAGAGTCTAAGCCTGCCAAACGTTACGGGGATTACTTTTTGCGTCAGATTGTCAAGCTTGAAGGTGTGATCAATGAGATGGACAGTATAAAGCTGGAGTGA	1545	0.4874	MANQDFEERQQPAQELGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKTKTEQEIALLRQFDQAWNVYGVLNFLQALVEKSTIIQILDQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQLREKYGEKMARMQRYDDEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLAKLASYMEVDEPTLRTILMTYKHKTHAVDSDGKIISNADLDFYVDDEVIHVIESKPAKRYGDYFLRQIVKLEGVINEMDSIKLE	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01436	514	Pfam	RNA polymerase I-associated factor PAF67	105	500	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Cca03g01436	514	ProSiteProfiles	PCI domain profile.	289	488	IPR000717	-
	Cca03g01436	514	Coils	Coil	342	362	-	-
	Cca03g01436	514	Hamap	Eukaryotic translation initiation factor 3 subunit L [EIF3L].	12	503	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Cca03g01436	514	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	17	513	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Cca03g01436	514	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L	17	513	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01436	K15029		-	gmx:100804691	1016.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01436	03	32771474	32775663	Cca03g01436	03	32771474	32775663	ECH