Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01434 ATGGTGAATCCCTTGGTAGAACGTGCCACGAGCAGCTTGCTCCTGGGCCCTGACTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGGATGGCAAAGGATGTTGTTAAAGGTTTAAAGAAGCGGATTGGAAGTAAACTTCCTAGAGTTCAAATTATTGCTCTGACTCTCCTGGAGACTATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCTGATAGAGATGTTCCTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTATCATGTCAAACAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCGAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTGAGCAATCTGCACCTGTATTAACGCCACTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATTCTGTTGCTCAGAAAGACACAGCTGAGTCCTCAGCAGAGTCTGAGTATCCAACCCTAACTTTGACTGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTTCAGAAATGCTAAATGCATTAGACCCTAGTAACAAAGAAGGGATTCAGCAGGTAGTTATTGTTGATTTGGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTCAATTCAACTTCGGATGAGTCCCTGCTATGCCAAGGACTAGCTCTGAATGATGATCTGCAGCGTGTTCTGGTCAAGCATGAATCCATTGCTTCAGGATCTTTGGGTTCCGGAACTTCTGCTCAAAATCATACTGAGAAACTGAATCCTGCACCTACTGGAGCAGTCATAGATGCTGATGGTCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGGGAGATCATCTTCCGGTGCTGAAGCTGGGTCTCAAACATTGAATCAATTATTGCTTCCTGCACCCCCAACATCAAATGGATCAGATCCCCCTGCAAAGGTTGATCCCAAAGTGGACCTGCTGAGTGGTGACGACTTTAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCCGTAGGAGAACAGATACCAGCCAGCCCTATGTCTCCACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAACGCACCTTCTTCTGTTATTAACCAGCCAATTAATGCTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGCAGACTTTCATATCTCAAGGGGTGTTTTACCCCAACGGGAGTGTGCCAAATGTGGGGTCACCTCGGTATGAGCAATCACCATTTACACAGAGCACAGGTCCTTCCTGGAATGGTCAGGTTGTGCAGCAGCAACAGCCTCGTTCACCAGTTTATGGTACAGAAAGCAGTGGATCATTTCCGCCACCTCCCTGGGAAGCTCAACCTACAGACACTGATAGTCCAGTAGCAAGCAGTCAATACCCACATCCACTGCAAGTCACTCAAATGGTTATGACGCAAATACAACATCCTCTAGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCATCCAAATGCTAGCCATATGTCAACTATGAATAACCCTGCTCAAAACAATCAGTTTGGCTTGCTCCCTCAACATATTCAGGGTGTTCCCGGTCCCTATATGGGTATGGTTTCACATCAAATGCATAATAGTCCTGTTGTTTCCATGTATCCTCAGCAGATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACCAGGGGTTCAATATCTTGAGCAGCAAATGTATGGTTTGTCAGTGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTGCTACATCCTATGTGCCACCTGGGAAGCCTTCCAAGCCTGAAGATAAGTTATTTGGGGACCTTGTTAACATGGCAAAAGTGAAACCAAAACCTGCTCCTGACCCAACTGGTAGCACGTAG 2010 0.4517 MVNPLVERATSSLLLGPDWALNMEICDILNRDPGMAKDVVKGLKKRIGSKLPRVQIIALTLLETIIKNCGDIVHMHVADRDVPHEMVKIVKKKPDYHVKQKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSEQSAPVLTPLQTQPLSSYPQNIRDSVAQKDTAESSAESEYPTLTLTEIQNARGIMDVLSEMLNALDPSNKEGIQQVVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLVKHESIASGSLGSGTSAQNHTEKLNPAPTGAVIDADGPLVDIGDTSKQTDGRSSSGAEAGSQTLNQLLLPAPPTSNGSDPPAKVDPKVDLLSGDDFNSPKAETSLALVPVGEQIPASPMSPQNALVLFDMFSNGSNAPSSVINQPINAAGQTSPLAPQFQQQQTFISQGVFYPNGSVPNVGSPRYEQSPFTQSTGPSWNGQVVQQQQPRSPVYGTESSGSFPPPPWEAQPTDTDSPVASSQYPHPLQVTQMVMTQIQHPLGPQAMGHDQAVGMYMHPNASHMSTMNNPAQNNQFGLLPQHIQGVPGPYMGMVSHQMHNSPVVSMYPQQMYGNQFVGYGYGQQPGVQYLEQQMYGLSVRDDGALRNSYQVSATSYVPPGKPSKPEDKLFGDLVNMAKVKPKPAPDPTGST 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01434 669 MobiDBLite consensus disorder prediction 437 477 - -
Cca03g01434 669 Gene3D - 1 147 IPR008942 -
Cca03g01434 669 PANTHER TARGET OF MYB PROTEIN 1 1 662 - -
Cca03g01434 669 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cca03g01434 669 MobiDBLite consensus disorder prediction 327 346 - -
Cca03g01434 669 Pfam VHS domain 4 123 IPR002014 GO:0035091|GO:0043130
Cca03g01434 669 MobiDBLite consensus disorder prediction 437 500 - -
Cca03g01434 669 PANTHER TOM1-LIKE PROTEIN 1 662 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca03g01434 669 CDD GAT_GGA_like_plant 188 266 - -
Cca03g01434 669 MobiDBLite consensus disorder prediction 268 285 - -
Cca03g01434 669 CDD VHS 2 130 - -
Cca03g01434 669 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Cca03g01434 669 Gene3D - 179 275 IPR038425 -
Cca03g01434 669 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Cca03g01434 669 MobiDBLite consensus disorder prediction 268 321 - -
Cca03g01434 669 SUPERFAMILY GAT-like domain 140 269 - -
Cca03g01434 669 MobiDBLite consensus disorder prediction 306 321 - -
Cca03g01434 669 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cca03g01434 669 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01434 Cca-Chr3 32743446 32753430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01434 - - gmx:100805762 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01434 03 32743446 32753430 Cca03g01434 03 32743446 32753430 ECH