Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01426 ATGGCATCTATTAGAAGAACCTTGTCCCCAGTGCCTAGAGCTGGGGCTGTAGCAAATGGTGAAGTCTGTTCAGTAGCTTCTCCTTTGTCGAAGACCTCATTGAGCCCTCAGAACTGCACACCTTCGGTTGGATTGGATTACCGAGCTCTTGTTTTTGGTGTTTTCTCCCCAAGGTCTTTCAGGGCATTTGAGAGATCAAAGCTGAGGGGACAGCTTTGGAGGAAGGTGCTTTTACATTTTTTCATTTGTTTTATGGTTGGTGTTTCTATTGGACTCATTCCACTTGCATCAACACACATGTCCATGAATGTCATGCAAAAACAACAAGCCTTCTCCTTTGAGATGATATCTGCAGTGGGAAATTTCCAGCCATTTGAGAATTTAAAGATAAATGTGACTCCATCGATCAATGAGGCTGTGAATTCTAATGCTACTTTGTATCCAGCTGTAAAAGACCAGGAACTAATAGATGGAGTGGCATATAATATCTCAGATAGCCAAATCCAAGTCAGTGAAAATCCATATTTGGCGTCTCAGAAGAAGCTTCTCATAATTGTGACCCCTACATACAATCATCTATTTCAAGCATACTACTTGCATCGCTTGGCACAGACATTAAAATTGGTTCCACCTCCCTTGTTGTGGATTGTTGTTGAGATGACTTCCCAATCTGAAGAAACTGCTGACATCTTAAGGAGTAGTGGGATTATGTACAGACATCTCATTTGTAAAACGAATCTAACCAACCCAAGCCATAGGAGCATTCTTCAAAGAAACGTTGCAATAGCTCACATCGAAACTCATCGCCTTGATGGAATTGTTTACTTTGCAGATGATGATAACATCTACTCAGTGGAACTCTTTCAGCAAATGAGAGATATAAGGCGATTTGGAACATGGACTGTAGCAAGATTATCAGGGGATAAAAGTAACATTGTCATGCAAGGGCCCATTTGTGATGGAAGCCGAGTAATTGGATGGCATACAGAGGAATCAAATGGGAAATCTAAAAGGTTTCATGCTGAAATGCCTGGTTTTGCCTTTAATAGTACAATACTCTGGGATCCAAAGAAGTGGCACCGCCCCACTCTTGACCCTATTAGGCAACTTGACTCAGTCAAGGAAAGTTTGTGGGTTAGCACATTGATTGAGCAGGTGGTTGAAGATGAGAGTCAAATGGAGGGCTTAATGGACAACTGCTCTAGAGTTATGGTCTGGCATATTGATCTTGAATCATCTTATTCGTTCTATCCTCATAAATGGGTAGTAAAGAACAACTTAGATGCCATTTTTCGTCTCCCGCTCATGTAA 1311 0.4142 MASIRRTLSPVPRAGAVANGEVCSVASPLSKTSLSPQNCTPSVGLDYRALVFGVFSPRSFRAFERSKLRGQLWRKVLLHFFICFMVGVSIGLIPLASTHMSMNVMQKQQAFSFEMISAVGNFQPFENLKINVTPSINEAVNSNATLYPAVKDQELIDGVAYNISDSQIQVSENPYLASQKKLLIIVTPTYNHLFQAYYLHRLAQTLKLVPPPLLWIVVEMTSQSEETADILRSSGIMYRHLICKTNLTNPSHRSILQRNVAIAHIETHRLDGIVYFADDDNIYSVELFQQMRDIRRFGTWTVARLSGDKSNIVMQGPICDGSRVIGWHTEESNGKSKRFHAEMPGFAFNSTILWDPKKWHRPTLDPIRQLDSVKESLWVSTLIEQVVEDESQMEGLMDNCSRVMVWHIDLESSYSFYPHKWVVKNNLDAIFRLPLM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01426 436 Pfam Glycosyltransferase family 43 202 411 IPR005027 GO:0015018|GO:0016020
Cca03g01426 436 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 430 IPR005027 GO:0015018|GO:0016020
Cca03g01426 436 CDD GlcAT-I 181 411 IPR005027 GO:0015018|GO:0016020
Cca03g01426 436 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 430 - -
Cca03g01426 436 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 182 425 IPR029044 -
Cca03g01426 436 SUPERFAMILY Nucleotide-diphospho-sugar transferases 182 427 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01426 Cca-Chr3 32641396 32646641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01426 1 433 Glycosyltransferase AT1G27600 44.240 2.05e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01426 K20869 - gmx:100808765 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01426 03 32641396 32646641 Cca03g01426 03 32641396 32646641 ECH