Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01423 ATGGAAGAAGCAAAGGGATTAGTGAACCACGTAGTCCTCACAAAGTTCAAGGACGACGTAGCTCCAGAGCGGATTGAAGACTTCATCAAGGGCTTTGCCAATCTAGTCAATCTCATCCCACCAATGAAATCATTCTCTTGGGGTAAGGATGTAAGTGACACAAGTATGCATCAAGGCTTCACTCATGTCTTTGTATCAACCTTTGAGAGTACAGAAGGCGTTGCAGAGTATTTAGCTCATCCAGCCCATGTTGAATTTGCAAATTTGTTCCTTCTCTGTTTCGAGAAAGTCATTGCCATTGACTATAAGCCTACCATTGTTAAATTGTAG 330 0.4212 MEEAKGLVNHVVLTKFKDDVAPERIEDFIKGFANLVNLIPPMKSFSWGKDVSDTSMHQGFTHVFVSTFESTEGVAEYLAHPAHVEFANLFLLCFEKVIAIDYKPTIVKL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01423 109 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Cca03g01423 109 SUPERFAMILY Dimeric alpha+beta barrel 8 105 IPR011008 -
Cca03g01423 109 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN HS1 1 108 - -
Cca03g01423 109 PANTHER - 1 108 IPR044662 -
Cca03g01423 109 SMART Dabb_2 8 104 IPR013097 -
Cca03g01423 109 Gene3D - 1 109 - -
Cca03g01423 109 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01423 Cca-Chr3 32585141 32586102 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01423 - - gmx:100305974 182.956