Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01421 ATGGAGCTTCCCCTTCTATCTTTTCCTTTTCCTCCTCTCAAACTTTCTTTTCCACGTTCAACAACAACAACTACGCGCCTCCTAGCTCATCATAACAAGGAAAACCAACCCAATTACTCCCACACTCCTCTCAATCGACACCTTCGAACCCCTCACAGCGGGTACCATTTTGATCGTACCACTCGCAAATTCTTTGAGGGTTGGTACTTCAAAGTGACCATTCCGGAACGGAGGCAAAGCTTCTGCTTTATGTACACCGTCGAGAATCCCGTCTTTCGTAAGCCGTTGACAGCGCTCGAGGAGGCCCAATACGGGCCCAGGTGTACCGGTGTCGGGGCCCAAATTCTGGGTGCTGGTGACAAGTATATCTGTCAATACTCTCCCGAATCGCATTACTTCTGGGGAAGCACACATGAACTAATGTTGGGGAACACCTTCGTGCCAAACCAAAATTTTGAACCTCCAAACATAGAGCTTCCGCCACAGGTTTATTTTCCATCTTTCAATCTTTAA 513 0.4776 MELPLLSFPFPPLKLSFPRSTTTTTRLLAHHNKENQPNYSHTPLNRHLRTPHSGYHFDRTTRKFFEGWYFKVTIPERRQSFCFMYTVENPVFRKPLTALEEAQYGPRCTGVGAQILGAGDKYICQYSPESHYFWGSTHELMLGNTFVPNQNFEPPNIELPPQVYFPSFNL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01421 170 PANTHER - 28 165 IPR025893 GO:0009976
Cca03g01421 170 Pfam Tocopherol cyclase 62 155 IPR025893 GO:0009976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01421 Cca-Chr3 32569279 32570349 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01421 K09834 - gmx:100791679 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01421 03 32569279 32570349 Cca03g01421 03 32569279 32570349 ECH