Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01418 ATGGAAAGCCTCTCAGAATTGGAAAATTTGAAAGAAGAACCTCTTCTGAGCAAGCAGAACTCCAACCCCAAGGGCGGCTTCAGAACCTTACCTTTCATCATAGCAAATGAGGCTTTTGAGAGACTGGCTAGCCTTGGGCTAATGCCTAACATGATATTGTACTTGACAAGAGAGTATGGCATGCAGACTGCAGAAGCCACTAATTTTCTCTTACTATGGTCCGCTGCCTCCAATTTCACACCCTTCATTGGTGCTGTCCTTTCAGACTCCTATGTGGGTCGATATTCCATGATTGCCTTTGGATCTATGGCAAGCTTATTGGGAATGATTCTTCTATGGTTAACAACTTTGATTCCTATGTCAAAGCCAGTTTGTAACCAATTTACCAGCAGCTGTAATAACTCCCCCACAACAATTCAGCTTTTGATCTTGCATTCTTCCTTTGCTCTCATGTCCGTTGGGGCTGGAGGCATAAGATCATGCTCCTTGGCCTTTGGTGTTGATCAGTTGAGTAAGAGGGACAAAGATGCAGGAATCCAAGATAGCTACTTCAGTTGGTATTATGCTGCTGTATCAATGTCATCACTGATAGGTTTAACTGTTGTTGTCTACATTCAAGATAACATGGGGTGGACAGTGGGGTTTGGAATTCCAGTTATCCTTATGTTGCTCGCAACTGTATCATTTTTCTTAGCTTCTTCATTTTATGTAATGGTGGGGGTTAAAAGGAACATGCTAAGTGGGTTAGCTCAGGTCCTTGTAGCCTCTTACGGAAATAGACTTCTGCAGTTACCAAAGGAGGAAGAGAATGGTGTCTACCACCTTGAGAAGGATTCCGATCTCCTAATGCCAACTGAAAAATTAAGGTTTCTCAACAAAGCATGCATCATTAGAAATCCCTTACAAGATCTAACACCAGACGGAAGAGCAGTGAATCCATGGAAACTTTGCACAGTAAACCAAGTGGAAGAACTGAAGGCACTCGTGAAGATAGTCCCAATTTGGACAACAGGAATCATGATGGCTGTGAACCTGAGTCAGGGTTCCTTTCTGGTACTAGAAGCATCCTCCATGGACCGCCACGTCACTTCAAACTTCCAAATTCCTTCAGCCTCCTTTGGGACATTTATGATTGTATCTCTAATACTTTGGGTTATAATTTATGACCGCATTTTCGTCCCTGTGGCATCAAAGATCAAAGGGTGCCCGGCACGCATAGGAGCAAAACAAAAAATAGGAGTTGGCCTTTTAACTAGTTGCATAGCACTCGCATCACTGGCACTTGTAGAGAGTATTAGACGCAAAATTGCTATTGAGCAAGGGTATTCGGATGAACCACAAGCTGTGGTGAACATGTCTGCTATGTGGCTATTGCCACGCCAAGTCCTTGATGGATTGGCTGAGGCCTCAAGTGTTATTGGACAGAATGAGTTTTTTCTCACTGAGCTACCTCCATCTATGTCTAGCTTAGCATCCACTCTTAGTGGCCTTGGGACTTCGGTTGCAGATTTGGTAGCAAGTTTCTTTCTGAGTGTTGTTGACAGTGTTACTGGAGGTGGAGGACATGAAAGTTGGCTTTCAAGCAACATAAACAAGGGCCATTATGACTACTATTATGCTTTTATTTGTGCATTGAGCTTTGTAAATTTTGTATATTTTCTATACTGTAGTAAATCTTATGGTCCTTGTAAGAGTAGAGGAAAATAG 1707 0.4265 MESLSELENLKEEPLLSKQNSNPKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYGMQTAEATNFLLLWSAASNFTPFIGAVLSDSYVGRYSMIAFGSMASLLGMILLWLTTLIPMSKPVCNQFTSSCNNSPTTIQLLILHSSFALMSVGAGGIRSCSLAFGVDQLSKRDKDAGIQDSYFSWYYAAVSMSSLIGLTVVVYIQDNMGWTVGFGIPVILMLLATVSFFLASSFYVMVGVKRNMLSGLAQVLVASYGNRLLQLPKEEENGVYHLEKDSDLLMPTEKLRFLNKACIIRNPLQDLTPDGRAVNPWKLCTVNQVEELKALVKIVPIWTTGIMMAVNLSQGSFLVLEASSMDRHVTSNFQIPSASFGTFMIVSLILWVIIYDRIFVPVASKIKGCPARIGAKQKIGVGLLTSCIALASLALVESIRRKIAIEQGYSDEPQAVVNMSAMWLLPRQVLDGLAEASSVIGQNEFFLTELPPSMSSLASTLSGLGTSVADLVASFFLSVVDSVTGGGGHESWLSSNINKGHYDYYYAFICALSFVNFVYFLYCSKSYGPCKSRGK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01418 568 CDD MFS_NPF1_2 30 560 - -
Cca03g01418 568 Pfam POT family 96 525 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca03g01418 568 SUPERFAMILY MFS general substrate transporter 23 557 IPR036259 -
Cca03g01418 568 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 23 561 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca03g01418 568 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01418 568 Gene3D MFS general substrate transporter like domains 7 566 IPR036259 -
Cca03g01418 568 PANTHER PROTEIN NRT1/ PTR FAMILY 1.3 23 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01418 Cca-Chr3 32528691 32538664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01418 17 562 Organic Solute Cotransporters AT1G52190 53.153 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01418 K14638 - gmx:100809846 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01418 03 32528691 32538664 Cca03g01418 03 32528691 32538664 ECH