Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01415 ATGAAAGCACGTAACTCCTTTTCAATTTCAGTGAGTTCGAGCACCTCTAACTTTAAATGCTCAGTTCATCAGCTGGAGTACATAGATGAGAATGCTCCTGCAAATTGGCCTGCATCATCTTGTGGCCCTCCTGATACTCCAACTGAATCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCAGCCATGGAACTCTCCAAAGCACTGCACAGCACCAACATTACCATCCCTACTGATATAGAGATGCCTCTTTCATGCCCTTCAGGCAACCAATTCGATACAAGGAGTTCCACTGCTTCAAAAGATTCTTTATCTAATGGGTGTTACCCTCCAATATCGCCAAAAGATAGTAACGAAAAGAAGGATTTACTTTTACTCCATCAAGCACTCAATCCGGAATTCCTTTCCAGTCAAAACTTGCTCAGAAATGGGCTTTACAGGAGCTTGATAAGAGGGAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGGACTCATAATGCTCATTTGCACGCTGCAGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCAGCAGTTGCAGCTTCAACAGCATCACCTGAAATGCCTTATTCCAACCAAAAGAACCCTCCCATGCCTTCTTCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGAGCTGAACATGACCATATCTTAACAGTAGTCAACTCTGCCATTAATGCAAAAACGAATGGAGATATAATGACTTTAACAGCTGGAGCAGCCACAGCCTTGAGAGGAGCTGCTACTCTAAAGGCAAGGTTGCAAAAGGGGCCTGGAGCAACAGCAATTCCTCTAGTTGAGGAAAAGTGTGATGAAAGCAAAGAAGTAAACATCTTGACAGCACTGGACTATGTCTTCAGAGGAGGAGAACTTCTCAAACGTACAAGAAAAGGAGCTCTTCACTGGAAGCAAGTGTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAGCATATGGCAGGAACATTCACAAAGAAGAAGAAATATATAGTCACCGGAGTTTGCAATGATATCCCAGCTTGGCCAGGAAGGGAGAAGGAAGACATCAATGAAAAGAAGGCATATTTTGGAATAAAAACAACAGACAGGACAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAAGTAACATTATAA 1275 0.4235 MKARNSFSISVSSSTSNFKCSVHQLEYIDENAPANWPASSCGPPDTPTESMEFLARSWSLSAMELSKALHSTNITIPTDIEMPLSCPSGNQFDTRSSTASKDSLSNGCYPPISPKDSNEKKDLLLLHQALNPEFLSSQNLLRNGLYRSLIRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEMPYSNQKNPPMPSSAIASAAALVASHCIEIAEDMGAEHDHILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATAIPLVEEKCDESKEVNILTALDYVFRGGELLKRTRKGALHWKQVSFNINSNLQVVVKMKSKHMAGTFTKKKKYIVTGVCNDIPAWPGREKEDINEKKAYFGIKTTDRTIEFECGSKGDKQFWLEGIQYMLNCRVKVTL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01415 424 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 19 421 - -
Cca03g01415 424 SUPERFAMILY PH domain-like 298 415 - -
Cca03g01415 424 MobiDBLite consensus disorder prediction 87 112 - -
Cca03g01415 424 Pfam Auxin canalisation 44 288 IPR008546 -
Cca03g01415 424 PANTHER EXPRESSED PROTEIN 19 421 IPR040269 -
Cca03g01415 424 Gene3D - 291 422 IPR011993 -
Cca03g01415 424 Pfam Plant pleckstrin homology-like region 315 418 IPR013666 -
Cca03g01415 424 ProSiteProfiles PH domain profile. 309 417 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01415 Cca-Chr3 32506312 32509603 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01415 - - gmx:100814154 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01415 03 32506312 32509603 Cca03g01415 03 32506312 32509603 ECH