Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01412 ATGGATTTCTACGGCAAGAGAACCCTCCTCAGCCTAATGGACACCGAAAAGCCAGAATCACCCATTCACCTCCGTCACAGAGAGATAAACGAACAAGACGTGGAGTTCAGCCCCCCAAGACCCTCAACCTCCGACACCAATGGCGTCTTCCCCATGATGCCAGATTCACCATGGACACTCTCCCCTCTCCCAAACCCTTCACCCTCCTTACTCTACCACTGCATCGCCTCCCTCCACCGCCACGAGGGCAACATCTACGCCATCGCCGCCTCCAAGGGCTTGGTCTTCACCGGCTCCAACAGCACCAGAATCCGCGTCTGGAAGCAGCCAGATTGCATGGACAGAGGCTACCTCAAAGCCAGTTCAGGCGAAGTCAGAGCCATCTTGGCCTACAGCAACATGCTCTTCTCCACCCACAAGGACCACAACATAAGAATCTGGACCTTCACCGTCTCTGATAACTTCAAGTCCAAGAAACTCGCCACCCTCCCTCGGAAAACCTCGCTCCTAGCATTCCCCACAAGAGGTAGAAGAAACACGCCAAAGCACAAAGACTCCGTCTCCTGCATGGCTTACTACCACTCCGAAGGCCTCTTGTACACCGGCTCCCACGACCGAACCGTGAAGGCGTGGCGCGTCTCCGACAAAAAATGCGTTGACTCCTTCGTGGCGCACGAGGACAACGTCAACGCCATATTGGTCAACCAAGACGACGGTTGCCTCTTCACCGGTTCCTCCGACGGGTCGGTGAAGATATGGAGAAGGGTCTACACGGAAGACTCGCACACGCTAACCATGACGCTGAAATTCCAACCCTCGCCCGTGAACGCTCTTGCATTGAGCTCCTCCTTCAACCACTGCTTCCTCTACTCGGGGTCCTCCGACGGGATGATAAACTTCTGGGAGAAGGAGCGGTTGTGCTACCGGTTCAACCATGGAGGGTTCTTGCAGGGTCACCGCTTCGCGGTGCTGTGTTTGGGTACGGTGGGTAACATGATATTCAGTGGGTCGGAGGACACGACGATAAGGGTGTGGAGGAGGGAGGAGGGGAGCTGCTACCACGAGTGTTTGACGGTTTTGGATGGCCACAGAGGGCCCGTGAGGTGTTTGGCGGCGTGTCTGGAGATGGAAAAGGTAGTGGTGGGGTTTTTGGTGTATAGTGCTAGTTTGGACCAGACATTTAAGGTTTGGAGGATTAAGGTTTTGCCGGATGAGAAGATGTGCGTCGACTACAGTAACACTACTGCTACTGAACCATCGCACTGTCAGGCCAAGGTCAAGATTAGAGACTACGATATGAGCCCCGTTTTGTCGCCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGCTTTTTTCAGTAG 1359 0.5445 MDFYGKRTLLSLMDTEKPESPIHLRHREINEQDVEFSPPRPSTSDTNGVFPMMPDSPWTLSPLPNPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSTRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHNIRIWTFTVSDNFKSKKLATLPRKTSLLAFPTRGRRNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDKKCVDSFVAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLGTVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVVGFLVYSASLDQTFKVWRIKVLPDEKMCVDYSNTTATEPSHCQAKVKIRDYDMSPVLSPSWVEKKLQGSFFQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01412 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 355 IPR001680 GO:0005515
Cca03g01412 452 SUPERFAMILY WD40 repeat-like 73 400 IPR036322 GO:0005515
Cca03g01412 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Cca03g01412 452 Gene3D - 173 313 IPR015943 GO:0005515
Cca03g01412 452 Gene3D - 314 444 IPR015943 GO:0005515
Cca03g01412 452 Gene3D - 71 172 IPR015943 GO:0005515
Cca03g01412 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 214 - -
Cca03g01412 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Cca03g01412 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 215 254 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 261 302 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 174 212 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 309 346 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 353 398 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 71 108 IPR001680 GO:0005515
Cca03g01412 452 SMART WD40_4 111 148 IPR001680 GO:0005515
Cca03g01412 452 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 445 IPR045182 -
Cca03g01412 452 PANTHER OS01G0232200 PROTEIN 1 445 - -
Cca03g01412 452 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Cca03g01412 452 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Cca03g01412 452 Pfam WD domain, G-beta repeat 315 345 IPR001680 GO:0005515
Cca03g01412 452 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Cca03g01412 452 Pfam WD domain, G-beta repeat 355 397 IPR001680 GO:0005515
Cca03g01412 452 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Cca03g01412 452 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Cca03g01412 452 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Cca03g01412 452 CDD WD40 74 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01412 Cca-Chr3 32478913 32480642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01412 183 402 Miscellaneous Gene Families AT5G08390 23.789 9.37e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01412 - - adu:107470716 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01412 03 32478913 32480642 Cca03g01412 03 32478913 32480642 ECH