Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01411 ATGGCAACTTGGTCATGCATGAATGTTGCCCCTAAATATTGCTCCGTTCAGAAACGACCCTTAATCGTCCCACGCCAACCCACTACTCTGGGACTTTCCTCGGCCTTCAAGCCGATCTTAAGAGCGATACCTCAAATTCCGCTGCAAATTGATGCTTCCAAAACCTTGACACACATTAAAACTAAGTTTCTTAACGCTGTTGTGGACTCAGCTTTTGAGTTTGTTGACCAGCTAGTGCTTCCATCTCAGAGTAACTTTGCTCCGGTGGAGGAGTTAGAGGAAGCCATGTCTATCACTAACATTGAAGGTCACATACCAGATCACTTTCCAGAGGGAGTCTACATTAGAAATGGTTCAAACCCACGGTTTGGAGGATTGAAATCATGCAAGTCTATGTTTGGGAGGACAAATAGCGTTTGGGTGGAAGGAGAAGGAATGCTTCATGGTTTGTATTTCAAAAGGCAAAATGAGGGTTGCTGCACTATCGTCTACAACAAGAGATATGTTGAAACTGAAACATACAAGCTCGAGAAACAAAGCACCAAGCCTTTGTTTCTCCCTGCTGTAAAAGGAGACTCATTGGCCGTTTTGTGTTCAATGCTTCTAAACGGGCTGAGATTTGGAAAACTAAATAAAGATTATAGCAACACCAATGTATTTGAGCATTCGGGCAAGTTCTACTCGGTTTCCGAGAATCACATGCCACAAGAGATTGATGTATTCACGCTAGATACTTTAAAATATTGGGATGTCAATGGAGCATGGAATCGCCCTTTCACCAGTCACCCCAAGAAAGTTCCTGATACAGGAGAGCTGGTTATTTTTGGGGTAGATGCAACTAAACCTTATCTTGAGATTGGAATAGTTTCTGCTGATGGAAAGGAATTGATTCGTAAAGAAGACATAAAACTAGAGAGATGCTCTTTATGTCATGATATAGGTATAACAAGCAGGTATATAGCAATATTGGACTTTCCACTGATTGTAGATTCAAACAGGCTATTTAGAAGAGGCCCATTAATCAAGTACGACAAGGAGAAATATTCCAGGATTGGGATAATGCCTCTCTATGGTGATGCAAACTCAATCCAGTGGTTTGAGGTGGAACCTAATACCACATTTCACATCATCAATTCTTTTGAGGAAGGTCATGAGGTTGTGTTGTGGGGCTGTAGAGCACTAGATTCAATAATTCCAGGACCTGAGGGTGGTTTAAATGAATCTAAGTTGTTCTCTCGGTGTTATGAGTGGCGATTAAACATGAAAAGCGGGGAGGTTAAGGAGAAATATCTCACTGAACCAGAACAGTTTATGGATTTCCCAGTAATTAATGCAAGTTTTACAGGAATTAAGAATAGATACGGATACACCCAAGTGGTTGATCCCACTGCAAGTTATGCTGCAGATATTCCTAAATATGGAGCTTTAGCGAAGCTATACTTTGAAGAAACTTGTTCAGAAGTCCCAGCGGGAGATACACAAGAAGAAGAGCCTATAAGGGTGGAATACCACAAATTTGAAAGTAATGTATTTTGCAGTGGATCTGCCTTTGTCCCCAAGGAAGGTGGCCTTGAAGAAGATGATGGTTGGATAATTACTTATATTCACAATGAGGATACTGGCATATCTCAAGTTCATATAATTGACACAAAGAAGTTTTCTGGAGAAGCAGTTGCCAAAATAACCATGCCTTGCAGAGTTCCATATGGATTTCACGGAGCTTTCATGCCAATTTCATTTTAG 1743 0.4096 MATWSCMNVAPKYCSVQKRPLIVPRQPTTLGLSSAFKPILRAIPQIPLQIDASKTLTHIKTKFLNAVVDSAFEFVDQLVLPSQSNFAPVEELEEAMSITNIEGHIPDHFPEGVYIRNGSNPRFGGLKSCKSMFGRTNSVWVEGEGMLHGLYFKRQNEGCCTIVYNKRYVETETYKLEKQSTKPLFLPAVKGDSLAVLCSMLLNGLRFGKLNKDYSNTNVFEHSGKFYSVSENHMPQEIDVFTLDTLKYWDVNGAWNRPFTSHPKKVPDTGELVIFGVDATKPYLEIGIVSADGKELIRKEDIKLERCSLCHDIGITSRYIAILDFPLIVDSNRLFRRGPLIKYDKEKYSRIGIMPLYGDANSIQWFEVEPNTTFHIINSFEEGHEVVLWGCRALDSIIPGPEGGLNESKLFSRCYEWRLNMKSGEVKEKYLTEPEQFMDFPVINASFTGIKNRYGYTQVVDPTASYAADIPKYGALAKLYFEETCSEVPAGDTQEEEPIRVEYHKFESNVFCSGSAFVPKEGGLEEDDGWIITYIHNEDTGISQVHIIDTKKFSGEAVAKITMPCRVPYGFHGAFMPISF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01411 580 Pfam Retinal pigment epithelial membrane protein 87 577 IPR004294 GO:0016702
Cca03g01411 580 PANTHER OS06G0162550 PROTEIN 32 578 - -
Cca03g01411 580 PANTHER BETA-CAROTENE DIOXYGENASE 32 578 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01411 Cca-Chr3 32467732 32471565 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01411 - - gmx:100817207 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01411 03 32467732 32471565 Cca03g01411 03 32467732 32471565 ECH