Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01410 ATGGCCACTTCAAATAAAACATTCTTAGTGAATTGCTCCATTCAGAAAAGACCCTCTTATGCCTCGGACAATTCTCATCATGACAACCTTCCACTCTTCCCTGCCTTTAAGCCACTTAAGAAAGTTCTTCATGAAGGCCCCTTGCAAATTGAATATGTTCACAAAACTATGACAAACACTGCAGCTAGATTACTCGACGCTTTTGTAGATTCATTCTTTGAATTTATTGACCAACCACTGCTTCCATCTCAGAGTAACTTTGCTCCGGTGGAGGAGTTAGGCGAAGCCATACTTGTGACCACCATCCAAGGACGAATTCCAGACGATTTTCCTGAGGGTGTCTACATTAGAAATGGACCAAATCCACTTTTTGGAGGACTAAAATCAACAAATTCTATCTTTGGGAGGTGTAGTCACACTTGGGTGGAAGGAGAGGGAATGCTTCACGCGTTGTACTTTAAAAGGTCAAGTCATGGGAGCTGGACGATCCTTTACAACAACAAGCACGTTGAAACCGACACATACAAGCTTGAAAAGCAGCAAAGCAAACCATTGTTTCTACCGGTCATACAAGGCGATTCACCAGCCATTTTGTCTTCTTATTTGCTAAACTGGTTGCGATTTGGCAAAGTAAACAAGTACATCAGCAACACCAATGTCTTTGAGCATTCAGGGAAGTTTTACTCTGTTGCTGAAAATCACATCCCACAAGAGATCGATATCTTTACACTCAAAACTTTAAAAAATTGGGATGTCAATGGAGCCTGGGATCGTCCTTTTACCAGTCATCCAAAGAAAGCTCCAGGCACAGGGGAACTAGTTACATTAGGGGTTTCCCCAACGAAACCTTTTGCCGTAGTTGGAATTATTTCTGCTGATGGAAAGAAATTGGTTCATAAAGTTGACCTTAAACTAAAGAGGTGCAGTCTTTGCCATGAGTTGGGTGTTACACAGAGGTACAATGTGATCATGGATTTTCCACTAACCATTGATCTAAACAGACTTCTTAGAGGTGGCCCATTAATTAAGTATAATAAGGAGGAATACGCTAGGATTGCGGTAATGCCACGCTATGGTGATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTAATTGCACTTTTCACATTATCAATTCTTTTGAGGATGGTCACGAGGTTGTAGTGAGGGGCTGCAGATCTCTAGATTCACTAGTTCCTGCACCTGACCCAAGTTTGATGGAATTTGAGTGGTTGTCTCGTTGTTATGAGTGGCGATTGAATATGCAAACGGGAGAAGTTAATGAGAGAGATCTGTGTGGAGCCAACGTATATTATATGGATTTTCCTATGATCAATGAAAACTTCATAGGTATTAGGAATAGATATGCATACACCCAAGTAGTTGATCTTATTGCAAGCTCTACTCAAGACGTGCCAAAATATGGAGGTTTAGCGAAGCTCTACTTTGAAGAATCATGTGCAGAGTTTTCCATGAGAGAGAAAGAGCAACCTGAAGAGGCTATACGAGTGGAATGCCACATGTTTGAGAAGAATACATTTTGCAGTGGGGCTTCCTTTGTCACCAGAGATGGGGGTCTTGAAGAAGATGATGGTTGGATCATAGCTTTTGTTCACAATGAAGACACTAACATATCTGAAGTTCATATAATTGACACAAACAAGTTTTCTGGCGATACGGTTGCCAAAATTACAATGCCTCGCAGAGTACCATATGGGTTTCATGGAGCTTTCATGCAAATTTCATTTCAGGCACATTAG 1761 0.4128 MATSNKTFLVNCSIQKRPSYASDNSHHDNLPLFPAFKPLKKVLHEGPLQIEYVHKTMTNTAARLLDAFVDSFFEFIDQPLLPSQSNFAPVEELGEAILVTTIQGRIPDDFPEGVYIRNGPNPLFGGLKSTNSIFGRCSHTWVEGEGMLHALYFKRSSHGSWTILYNNKHVETDTYKLEKQQSKPLFLPVIQGDSPAILSSYLLNWLRFGKVNKYISNTNVFEHSGKFYSVAENHIPQEIDIFTLKTLKNWDVNGAWDRPFTSHPKKAPGTGELVTLGVSPTKPFAVVGIISADGKKLVHKVDLKLKRCSLCHELGVTQRYNVIMDFPLTIDLNRLLRGGPLIKYNKEEYARIAVMPRYGDANSIKWFEVEPNCTFHIINSFEDGHEVVVRGCRSLDSLVPAPDPSLMEFEWLSRCYEWRLNMQTGEVNERDLCGANVYYMDFPMINENFIGIRNRYAYTQVVDLIASSTQDVPKYGGLAKLYFEESCAEFSMREKEQPEEAIRVECHMFEKNTFCSGASFVTRDGGLEEDDGWIIAFVHNEDTNISEVHIIDTNKFSGDTVAKITMPRRVPYGFHGAFMQISFQAH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01410 586 Pfam Retinal pigment epithelial membrane protein 88 579 IPR004294 GO:0016702
Cca03g01410 586 PANTHER OS06G0162550 PROTEIN 35 581 - -
Cca03g01410 586 PANTHER BETA-CAROTENE DIOXYGENASE 35 581 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01410 Cca-Chr3 32456120 32460236 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01410 - - gmx:100817738 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01410 03 32456120 32460236 Cca03g01410 03 32456120 32460236 ECH