Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01405 ATGGCTTTCACTTCCCTGCCCTCTGTTAGAAGCTCCATTTCATGCCCAACTATGCTTGTTCCCGATAACATTTCACCACGAAATAATAAAGGCCTCTATAAAGGGCAACGCAACCTCCGAGACTTGACCGTACCAAATGTTGCAACCCCATCACCTGAGACCCTGATTGCCCCTCCAACACCGCAGGAACGCCCACGGACCACCACCCACCATGTTGCATGGACTAGTGTCCCACAAGAGAGATGGGAAGGAGAGTTGCATGTTCAAGGCCAAATACCACTATGGCTCAAAGGAACGTACCTTAGGAATGGGCCTGGCATGTGGCACATAGGGGATTATAACTTCAGGCACCTCTTCGACGGTTACGCGACGGTGGTGAAGCTCCATTTCGAGAACGGGGGGTTAGTCGGCGGCCACCGGCAAATCGAATCGGAGGCGTACCGCGCCGCCAAGAAGAACCAGAAGATATGCTACCGGGAGTTTTCCGAAGTGCCTAAGGCGGCGAATTTCCTGGCCTACGTGGGGGAACTGGCGAGCCTGTTCTCCGGCACGTCGCTGACCGACAACGCGAACACCGGCGTGGTGAGGCTGGGCGACGGGAGAGTGGTGTGCCTGACGGAGACTCAGAAAGGATCCATAGTGATAGAACCGGAGACGCTGGAAACGGTGGGGAAGTTCGAGTACAGTGACTCGCTGGGGGGTCTCATCCACTCTGCACACCCTATTGTGACTGATCAAGAGTTTTTGACGTTGTTGCCTGATTTGGTGAGGCCCGGTTACCTTGTGGTGAGGATGGAGCCTGGGTCCAACCAGAGGCGGGTTATTGGGCGGGTCGATTGTCGGGGCGGCCCATCACCCGGTTGGGTTCACTCTTTCCCCGTCACCCAACATTATGTTGTTGTGCCTGAAATGCCCTTGAGGTACTGTGCTCAGAATTTGCTCAGGGCTCAGCCTACCCCCTTGTACAAGTTTCAGTGGCACCCTCACTCCAAGGCTTTCATGCATGTCATGTGCAAGACTAGTGGAAACGTTGTGGCAAGTGTGCAAGTGCCTCTGTTCGTTACTTTCCATTTCATAAATGCCTACGAGGAGCGAGATGTGGATGGGAGGGTCACCGCCATTATTGCTGACTGTTGTGAGCACAATTCAGATGCTTCCATTCTTGATTCGCTTAGGTTGCAGAACCTTCGCTCCTTTAATGGTCAAGATGTTCTCCCTGATGCTAGGGTTGGTCGGTTCAGAATACCCATGGATGGAAGCCCATACGGAACATTAGAGGCAGCATTGGATCCGAATGAACATGGGAGAGGCATGGACATGTGCAGCATAAACCCTAATTATTTAGGGAAGAAATACAGATATGCCTATGCTTGTGGAGCACACCGACCTTGTAACTTCCCCAACACCCTCACCAAGCTTGATTTAGAATTGAAAAAGGCTAAGAACTGGCATGAAGAAGGTGCTGTGCCCTCAGAACCCTTCTTTGTGGCACGACCTGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCCATAATCAGTGAGAAAAATGGAGACGGATATGCATTGCTGTTAGATGGTTCCACTTTTGAAGAGATTGCTAGGGCCAAGTTCCCTTATGGACTTCCATACGGATTGCATGGCTGCTGGGTTCCAAAAGAGTAG 1665 0.5189 MAFTSLPSVRSSISCPTMLVPDNISPRNNKGLYKGQRNLRDLTVPNVATPSPETLIAPPTPQERPRTTTHHVAWTSVPQERWEGELHVQGQIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATVVKLHFENGGLVGGHRQIESEAYRAAKKNQKICYREFSEVPKAANFLAYVGELASLFSGTSLTDNANTGVVRLGDGRVVCLTETQKGSIVIEPETLETVGKFEYSDSLGGLIHSAHPIVTDQEFLTLLPDLVRPGYLVVRMEPGSNQRRVIGRVDCRGGPSPGWVHSFPVTQHYVVVPEMPLRYCAQNLLRAQPTPLYKFQWHPHSKAFMHVMCKTSGNVVASVQVPLFVTFHFINAYEERDVDGRVTAIIADCCEHNSDASILDSLRLQNLRSFNGQDVLPDARVGRFRIPMDGSPYGTLEAALDPNEHGRGMDMCSINPNYLGKKYRYAYACGAHRPCNFPNTLTKLDLELKKAKNWHEEGAVPSEPFFVARPGATEEDDGVVISIISEKNGDGYALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01405 554 Pfam Retinal pigment epithelial membrane protein 77 552 IPR004294 GO:0016702
Cca03g01405 554 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 10 553 - -
Cca03g01405 554 PANTHER BETA-CAROTENE DIOXYGENASE 10 553 IPR004294 GO:0016702
Cca03g01405 554 MobiDBLite consensus disorder prediction 44 66 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01405 K17913 - gmx:100814148 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01405 03 32357009 32366679 Cca03g01405 03 32357009 32366679 ECH