Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01403 ATGGCTCACCTCTTCCGAGACCTCTCATTGGGCCATTCCAAGAGGGACGCCACTCCGCCGCCGATAATGCCTCCCAAATCCACCGCCGCTGCCGACGACCTTCCCTCTCCGCTCGGCCAACTCGCCGCCGCCCTCTCCGATTCCGACCTCACCCTAACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTCCGCGCCGAACCACTCCTCCAATTCACCGAGTCAGAACTCGCCGAACTCGCCCGCGCTCCAGCGATCCATCACCTCCACCGCCGCCAGCAAGGTCAAGAAGGCCTTCGGCCTCAAATCGCCCGGTTCCGGTTCGCGGAAGAGCCCTGGCTCCGCCATGGATTCGCGCGTGCGACGCGCTCTGCTCAGGATTTCGGCTGGCCAGGTTGGGAGAAGGATTGAGTCTGTGGTGGTTCCGCTTGAGTTGTTGCAGCAACTCAAGGCTTCGGACTTTACTGATCAGCAAGAGTATGATGAGTGGCAGAAGAGGACCTTGAAGGTTTTGGAGGCTGGTTTGATTTTGCATCCTCACATGCCCTTGGATAAGTCGAATTCTGCGGCACAGCGGCTGCGGCAGATTGTTCATGCTGCACTGGATAAGCCTATACAAACAGGGAAGAATACCGAGTCTATGCAGGTTCTTCGTAGTGCTGTCATGTCCCTAGCAAATAGGTCGTATGATGGCTCTTACGCTGATTCGAGCCACTGGGCCGATGGAATTCCTCTGAACCTCCGGCTTTATGAAATGCTTCTGCAATCTTGCTTTGATGCTAATGATGAATCGTCCATTATTGAGGAATTTGATGAGCTAATGGAACAAATCAAGAAGACCTGGGGAATCCTTGGGTTGAATCAGACACTTCATAATCTCTGTTTTACTTGGGTTTTGTTTCACCGGTTTGTTGCTACTGGCCAGATGGATTTGGACCTGCTGTCTACTGCTGACGGCCAGCTGGCAGAAGTTGCGAAAGATGCAAAGACAACAAAAGATGCAGAATATTCCAAAGTTTTGAGTTCTACGTTGACTTCAATATTGGGGTGGGCTGAGAAAAGGCTCCTTGCTTATCATGAAACTTTTGACCGTGGAAATGTTGAAACCATGCAAGGCATCGTCTCTTTAGGGGTTGCAGCAGCTAAGATTTTGGTTGAGGATATATCTAATGAGTATCGCCGGAGGAGAAGGAATGAGGTCAATGTGGCACGTGAAAGAATTGAAACTTACATCAGGTCATCACTACGAACAGCTTTTGCCCAGGCAAACTCCAGCAGGAGAGCATCCAAAAATCAGCCAAATGCTCTCCCTGGCCTTGCCATCCTTGCAAAAGATGTTGGTAGCCTGGCAGTCAATGAAAAGCAAGTGTTCAGTCCAATACTTAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCCACCCTTCATGCTTGCTATGGAAACGAATTGAAGCAATTCATCTCAGGTATCACAGAATTGACACCTGATGCTGTTCAAGTGCTGAGAGCTGCAGATCAGTTGGAGAAAGACCTTGTGCAGATAGCAGTTGAGGATTCAGTAGAAAGTGATGATGGTGGTAAGGCAATTATCCGTGAGATGCCTCCTTTTGAGGCTGAAGGTGCAATTGCCAATCTTGTGAAAATATGGATTAAGACTAGAATAGACAGACTAAAGGAATGGGTTGATAGAAATCTGCAGCAAGAGGTCTGGAGTGCTCAAGCAAATCAGGAAGGATATGCCCCATCTGCTGTTGAAGTTTTGCGGATTATAAATGAAACTTTGGATGCTTTCTTTCAGCTTCCAATACCGATGCATCCCGCATTGCTTCCTGAAGTGATGAATGGCCTTGACAGATGCCTTCAGTACTACGTTATCAAAGCAAAATCTGGCTGCGGATCACGAAATGCATTTCTTCCAACAATGCCAGCATTGACCAGATGCACTATTGGTTCAAAGTTTCAGGGCTTTGGGAAGAAAAAAGAGAAATCTCCAAATCCTCAGAAAAGAAACCCTCAGGTTGCAACAAATGGGGATAGCTCTTCAGGAATACCACAACTCTGTGTTCGCATAAATACTTTGCAATGGATCCTGGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACCCTTTTACGGAACTCTGAATCTGCTCATGCAGAAGATTTTTCAAATGGATTAGCAAAGAAGTTTGAACTGTCTCCAGCAGCATGTCTTGAAGGAATTCAGCAACTCTGCGAAGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGTAATGTTTTATGGGATGGTTTATACGTTGGGGATCCAGCATCTTCCAGGATTGAGCCATTTCTTCAGGAACTTGAGCGGAAGTTAATGTTCATTTCAGATACTGTTCATGAAAGAATTCGCACACGTATTATTACTGAAATCATGAGAGCATCCTTTGATGGATTCTTGCTTGTATTGCTTGCTGGAGGTCCTTCACGAGCTTTTACCCGGAAGGATTCTCAAATCATCGAGGATGATTTCAAATTTCTCAAGGAGCTGTTTTGGGCAAATGGGGATGGATTGCCTTCTGAATTAATAGATAAGTTTTCAACTACTGCTAGATCTATCCTTCCCCTTTTCAGAACTGACACAGAAAGCCTCATTGAGCAGTTTAGACGGGTGACCATGGAGACGTATAAATCCTCTGCCAGGTCTAAACTTCCATTACCTCCAACTTCTGGACAGTGGAATCCATCAGAACCAAACACATTGTTACGTGTTTTATGCTATAGAAATGATGAATCAGCTACTAAGTTTCTGAAAAAGACATATGATCTACCTAAGAAACTTTAA 2853 0.4648 MAHLFRDLSLGHSKRDATPPPIMPPKSTAAADDLPSPLGQLAAALSDSDLTLTAYEIFVAACRTSSGKPLSSAPNHSSNSPSQNSPNSPALQRSITSTAASKVKKAFGLKSPGSGSRKSPGSAMDSRVRRALLRISAGQVGRRIESVVVPLELLQQLKASDFTDQQEYDEWQKRTLKVLEAGLILHPHMPLDKSNSAAQRLRQIVHAALDKPIQTGKNTESMQVLRSAVMSLANRSYDGSYADSSHWADGIPLNLRLYEMLLQSCFDANDESSIIEEFDELMEQIKKTWGILGLNQTLHNLCFTWVLFHRFVATGQMDLDLLSTADGQLAEVAKDAKTTKDAEYSKVLSSTLTSILGWAEKRLLAYHETFDRGNVETMQGIVSLGVAAAKILVEDISNEYRRRRRNEVNVARERIETYIRSSLRTAFAQANSSRRASKNQPNALPGLAILAKDVGSLAVNEKQVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVESDDGGKAIIREMPPFEAEGAIANLVKIWIKTRIDRLKEWVDRNLQQEVWSAQANQEGYAPSAVEVLRIINETLDAFFQLPIPMHPALLPEVMNGLDRCLQYYVIKAKSGCGSRNAFLPTMPALTRCTIGSKFQGFGKKKEKSPNPQKRNPQVATNGDSSSGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAHAEDFSNGLAKKFELSPAACLEGIQQLCEAAAYRIVFHDLSNVLWDGLYVGDPASSRIEPFLQELERKLMFISDTVHERIRTRIITEIMRASFDGFLLVLLAGGPSRAFTRKDSQIIEDDFKFLKELFWANGDGLPSELIDKFSTTARSILPLFRTDTESLIEQFRRVTMETYKSSARSKLPLPPTSGQWNPSEPNTLLRVLCYRNDESATKFLKKTYDLPKKL 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01403 950 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 507 650 IPR014770 -
Cca03g01403 950 MobiDBLite consensus disorder prediction 664 689 - -
Cca03g01403 950 MobiDBLite consensus disorder prediction 68 96 - -
Cca03g01403 950 PANTHER PROTEIN UNC-13 HOMOLOG 2 950 IPR008528 -
Cca03g01403 950 MobiDBLite consensus disorder prediction 106 125 - -
Cca03g01403 950 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 781 891 IPR014772 -
Cca03g01403 950 MobiDBLite consensus disorder prediction 1 34 - -
Cca03g01403 950 PANTHER ELONGATION FACTOR TS (DUF810) 2 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01403 Cca-Chr3 32333799 32338806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01403 - - gmx:100814675 1725.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01403 03 32333799 32338806 Cca03g01403 03 32333799 32338806 ECH