Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01402 ATGGATGGTCAACTTGGTATAAATGGAGAGGAATCGCAGGACAATGAATATGCGGTTGGAGACTATTCTCTAGTGCCCCACTTACTGAACAAGTTTCATGAATTGCATCCCTCTGATTCTTCATCGGGTGTGTCTGAAGCAGAAGGCACAACATCACTCAAGCTATCTCAGATATGTGCTGTTAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAATCGTGGGACCCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGTGGGTTGGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGTCACTCTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCTCTGGTTAGTGCTGGAGAGTCCTACAATGGTGAAGATCTAGTGTGCTATTCATGGGGTAATAACAACCATGGCCAATTAGGCTTGGGGGATAGAGAGAGCAGGTTGCATCCAGAAGTTGTTAAAACATTTGATGAAGAGTCCCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCATAAAAAGAATGCTAGTGACACATTAGAAAGCACATGCTGGACCTTTGGCCGTGGGGATAATGGCCAGCTTGGGCATGGAACAACTCAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCTCAAAATGTATCACTTATTTGTGTTGACTGTGGTTTGTTTCATACGAGTGTTGCTTCCTCAGCCGGGGATGTGTGGTCGTGGGGAATGGAGAAGGGCCTTGGTTTGTGCCCTGATGCTAGTCGTTCTGGAACAGATTCTGGTGATGCCCTCTCTCCCCGTGTTATGTCATGCAAGCCATATGAACCTAAATTTCCAGATCCGGTTAAAGTTGCATGTGGGGCTGCACATACTGTTATTGTTGCACGAGAGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAGATGGTAAAGGAGTAGATTGTTACACTCCCACAGTTGTAGTGTGGCCCACACCGATGGAGGATTTCGAGGAAGAGGAAGTAAAAAGCTCTGGTAAAGAGCAAGATAAGGCAATAGAAAAGGAGACTGAAGCAACAACAGAAACAGAAGAGAAACTATCCTTAGCATTGAGTGAGATGAAGCTGCTCCAAACAAAGCTATCTATAATGGAAAAATATGCAAGTGTACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGATTCATTGCGGAATTCAGGTTCATTTGACATTGGAAAAGAATGGGAGAAGATGTTAGAGGCAGCAGATCATAGGAAACTAATTAGGTTGGAAATGTTTTACCGTGACATGCTTGCGGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATAGTAAAGGAGTGCCTCCAATCTTCAGAGGCGAAAATTTAG 1449 0.441 MDGQLGINGEESQDNEYAVGDYSLVPHLLNKFHELHPSDSSSGVSEAEGTTSLKLSQICAVKAGGMMSLAIDNRGTLWMWGNCPQQSKEGGLALVSSFTPTPVWDFQGHSVVKVACGNEHVVALVSAGESYNGEDLVCYSWGNNNHGQLGLGDRESRLHPEVVKTFDEESPYEVACGAFHTALLTHKKNASDTLESTCWTFGRGDNGQLGHGTTQSTLFPTPVKELPQNVSLICVDCGLFHTSVASSAGDVWSWGMEKGLGLCPDASRSGTDSGDALSPRVMSCKPYEPKFPDPVKVACGAAHTVIVAREGYRMWSWGRGRSGVLGDGKGVDCYTPTVVVWPTPMEDFEEEEVKSSGKEQDKAIEKETEATTETEEKLSLALSEMKLLQTKLSIMEKYASVLHGSIFGKPFDEQDIPDSLRNSGSFDIGKEWEKMLEAADHRKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEAKI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01402 482 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 174 184 IPR000408 -
Cca03g01402 482 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 187 IPR000408 -
Cca03g01402 482 Pfam Regulator of chromosome condensation (RCC1) repeat 198 243 IPR000408 -
Cca03g01402 482 Pfam Regulator of chromosome condensation (RCC1) repeat 139 184 IPR000408 -
Cca03g01402 482 Gene3D - 1 378 IPR009091 -
Cca03g01402 482 MobiDBLite consensus disorder prediction 348 372 - -
Cca03g01402 482 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Cca03g01402 482 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Cca03g01402 482 PRINTS Chromosome condensation regulator RCC1 signature 198 214 IPR000408 -
Cca03g01402 482 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 7 481 - -
Cca03g01402 482 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Cca03g01402 482 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 481 - -
Cca03g01402 482 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 248 IPR000408 -
Cca03g01402 482 SUPERFAMILY RCC1/BLIP-II 57 342 IPR009091 -
Cca03g01402 482 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 75 127 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01402 Cca-Chr3 32329220 32332308 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01402 - - gmx:100815199 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01402 03 32329220 32332308 Cca03g01402 03 32329220 32332308 ECH