Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01401 ATGAACTCTTCTGGCTCCAATTCCAATTCTCCATCAAaccataacaatcatcaccaccaccaccaccCTCGGTTCAAACCAAGCCAACCCATCTCAGACCGAATAGTCCGCGCcctccgccaccgcctccgcctcctccaccgtgccggctccacctTCTTCATATTTGGCGCCACCGGAAACGTGTACACGGTGACCCTCTCCTCAACCCCCTCATGCACCTGCCCTGACCGTACCACCCCATGCAAGCACATCCTCTTTGTTTTCATTCGAGTTCTTGGCGTGTCCCTTGATGACGTGTGTCTAAGGAGGAGGACCCTCCGTCCCTGCCAGCTTCAGCGCCTCCTAGGCACGCCGACGCTGCCGGAGGCGGTGGCGGGGGGCAGCCTCCGGCAGAGGTTTCACCAGCTGTTCTTTGGTGGAGGGTCAGCAAGGCCAAAGATAGAGATGGAGGAGGGTGCAACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCAAAACCTGGTGGCGTGTGGAACATGCCGTAACCCCATTCATGAAGAATGCTTGATGAGGTGGAAGAGAAGCAGAGGAAGAAGAACGGCTAGTTGTGTGATTTGTAGGGCGAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTCAATCTCTCTGCTTATGTTAGCGAGGATGATATGGGACAACCTGCGGGGGGTATCTGCACCGGCTAA 711 0.4965 MNSSGSNSNSPSNHNNHHHHHHPRFKPSQPISDRIVRALRHRLRLLHRAGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGTPTLPEAVAGGSLRQRFHQLFFGGGSARPKIEMEEGATCPVCLEEMGKEQNLVACGTCRNPIHEECLMRWKRSRGRRTASCVICRARWRDRVEQDKYLNLSAYVSEDDMGQPAGGICTG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01401 236 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 2 226 IPR039903 GO:0061630
Cca03g01401 236 MobiDBLite consensus disorder prediction 1 30 - -
Cca03g01401 236 ProSiteProfiles Zinc finger RING-type profile. 156 202 IPR001841 -
Cca03g01401 236 Pfam Ring finger domain 155 202 IPR001841 -
Cca03g01401 236 Pfam SWIM zinc finger 63 91 IPR007527 GO:0008270
Cca03g01401 236 SUPERFAMILY RING/U-box 147 209 - -
Cca03g01401 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 219 IPR013083 -
Cca03g01401 236 ProSiteProfiles Zinc finger SWIM-type profile. 63 93 IPR007527 GO:0008270
Cca03g01401 236 PANTHER - 2 226 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01401 - - var:108321788 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01401 03 32318713 32326110 Cca03g01401 03 32318713 32326110 ECH