Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01400 ATGTTCCCTTCATTCCTCAATTCTAATCAACCTCGGGACCAGCAACAACAGAGGCAAAAAGGAGAATGGTTAGCAGGAAGTTTCAAGCCAGAGAATTTCATTCCAGGTGTTGTTATAGGTTTCATTTTTGGGTTGTTGTTAGATTTATCAAAGCCCAGTAGAAATCACTTGTCCAAGAAAATATTCTCATCTACCAAACTTCAACAGCCACTCTCAGTCTCAAGTAATGGTGATCAAGAACTTAAAATGGTTCTGGTCGTTAGGCAAGACCTAAAGATGAAGTCTGGAAAGATTGCATCCCAATGTGCTCATGCTGCCACTGGCATGTACGCTGAATTAATGCAAAGTGATCGGTCTCTTTTGAGACATTGGGAACAGTGTGGCCAACCCAAAATTGTTGTGACTTGCAGGAATCAACAAGAAATGAATAAACTGAAGGAAACAGCTGAGAGTATTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGAACACAGGTTTTGGCAGGATCAAAGACTGTTCTTGCTGTTGGACCTGGACCAAAATCTTCTGTGGATTCAGTGACTGGGAGACTGCCCCTGCTTTGA 588 0.4252 MFPSFLNSNQPRDQQQQRQKGEWLAGSFKPENFIPGVVIGFIFGLLLDLSKPSRNHLSKKIFSSTKLQQPLSVSSNGDQELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRHWEQCGQPKIVVTCRNQQEMNKLKETAESIGLPTFVVADAGRTQVLAGSKTVLAVGPGPKSSVDSVTGRLPLL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01400 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 8 195 - -
Cca03g01400 195 SUPERFAMILY Peptidyl-tRNA hydrolase II 80 195 IPR023476 -
Cca03g01400 195 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 81 195 IPR002833 GO:0004045
Cca03g01400 195 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g01400 195 Pfam Peptidyl-tRNA hydrolase PTH2 81 195 IPR002833 GO:0004045
Cca03g01400 195 CDD PTH2 82 195 IPR002833 GO:0004045
Cca03g01400 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2 8 195 IPR002833 GO:0004045
Cca03g01400 195 Gene3D Bit1 76 195 IPR023476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01400 Cca-Chr3 32310434 32312788 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01400 K04794 - gmx:100527852 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01400 03 32310434 32312788 Cca03g01400 03 32310434 32312788 ECH