Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01389 ATGATGAAGCCACGCACAGACACACACTTCCCTCTGCCGCACGTGGCGGACATCACGTGCATGGACCCGAGCCGCGCGCCGCTCGTGGCGGAGAAACTCTGCAAAACGGTGCGTTTGCTGGGCTACGACATGCAGGACATGGTGAAGCGAGGGAAGAGCATAGGGAAGGCGCTCAACGACGTCGTCGTGCGCCACCACCAGGCCCTCACGTGCCGCCCGCGCGACGCGCACGTCTCCTTCGTGTCGCCGCTCGAGTACCAGTTCAGCTGCAGCGGGAGTCCGCCGCGCCGGAGGAGGCTCTCTCCGCCCTCCGCGGCGCACCGCCCGCCCAGGATGTGCCGCGGCGACGGCGGCGCGATAGAGAGGCGCGTGAAGATCTCCGGGTCGATGGTGAAGCAGGCGGAGAAGGATTTTGAGGTGGATGAGGCTGCGGAAGAGTTCATAGCAAGGTTCTATAGAGAGTTGAGGTTGCAGAAATGGTTGGATCATCAGTATTGCTGA 501 0.6327 MMKPRTDTHFPLPHVADITCMDPSRAPLVAEKLCKTVRLLGYDMQDMVKRGKSIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRRRRLSPPSAAHRPPRMCRGDGGAIERRVKISGSMVKQAEKDFEVDEAAEEFIARFYRELRLQKWLDHQYC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01389 166 Pfam Cotton fibre expressed protein 139 159 IPR008480 -
Cca03g01389 166 PANTHER DUF761 DOMAIN PROTEIN 21 108 - -
Cca03g01389 166 PANTHER DUF761 DOMAIN PROTEIN 120 164 - -
Cca03g01389 166 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 21 108 - -
Cca03g01389 166 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 120 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01389 Cca-Chr3 32134568 32135243 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01389 - - ccaj:109818056 330.487