Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01386 ATGGACCGCTTGCGTCCTCGGAGCCGAGCGGTCTTTTCTGGGTTTACAAATGCCGAGATTGAGAGAATGGAGAAATTGTTAAGGGAATCTAAGGTAGGATCATTTGGCAGGGAATTTTGCCAAAAACTGGCTGGAAGTTTCAACCGATCCTCTGGTCGTGCTGGGAAGCCTGTCATAAAATGGACAGAGATTGAAAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAACAGTGAGTTGATGATGGTTCCTAAATGCCTTGAATGCAAGGAAGTGAAAATTATGCCAGATCCATCAGAGTTGGAATTTGAAGCCAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTATAGCTCACAGATTTCTTAGCACAGGGGAAGCTGAAGTCCATGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAACATTAAAACTTCAGTTCGCCAACGCTCTATTCCTTTTGAAAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTCTGTCCTGTGCTTTCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGTAGGTGCCTCATCTTAATTCGATATGAACATGACAACTGCGAGGAAAGAGTTCGGTTGAGGAGACTTTGCCGCAGACCAAGATGTTAG 708 0.4407 MDRLRPRSRAVFSGFTNAEIERMEKLLRESKVGSFGREFCQKLAGSFNRSSGRAGKPVIKWTEIESWFQTRLQDSPQVPNSELMMVPKCLECKEVKIMPDPSELEFEARSSKDGAWYDVEAFIAHRFLSTGEAEVHVRFVGFGAEEDEWINIKTSVRQRSIPFENTECSNLKVGDSVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCLILIRYEHDNCEERVRLRRLCRRPRC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01386 235 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 9 234 IPR039276 -
Cca03g01386 235 Pfam SAWADEE domain 103 230 IPR032001 GO:0003682
Cca03g01386 235 Gene3D - 163 235 - -
Cca03g01386 235 Gene3D - 101 162 - -
Cca03g01386 235 PANTHER OS09G0346900 PROTEIN 9 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01386 Cca-Chr3 32100256 32105353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01386 - - gmx:100817690 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01386 03 32100256 32105353 Cca03g01386 03 32100256 32105353 ECH