Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01384 ATGGATGACGAGGAGAGAGAGAGACTTCTGGAGAGGGAGAGATTGCAAATCCAGGTGATTCGCCAGCTCGATCTcgaggacctcgaagtcgaagaagtcgatcactccggtgacgacgacgacgactacgccaacgaggaGTATGCGCAATACCTCTCACAATTCACTTCTCCCACTCCTGATCCTGACTCATCCGTTGAATTCACTTTCGATACCTATATCGCGCCTTTGCATACGTATCTCGGTGATGTCGAAGACACGCGCCACAGGACGGCGTTGTTGGACGGTGGTGCTGTTGTCAACGTTCCACTCTTCAGTCTCCAAGGAGTTGTACTCTTTCCCGGGGCCACTCTTCCCCTTAGAGTTATTGAACCTCGTTTCGTGGCTGCTGTTGAGAAAGCTTTGACTCAAGACAATATTCCTTACACCATTGGTGTGATTCGAATTCACAGGGATACTGCAAATCTTAGGATGAAATCAGCAAGCATTGGGACCACTGCAGAGATTCGACAATTTGGGCGTCTGGGGGATGGTACACTGAATGTTGTTACCCGTGGACAACAACGATTTCGCCTAAGACGGACCTGGAATGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGATCTGCCACTGAGAGCACCAAGGGTTGCTTTTGGAAAATTAGCACCATTGAGTAATAGTCAAGCAGTCTCACATATGGTGTCTCCAAAGTATTCTCACATTAAGATGCAAAGCTCAAAGAATGAGGAAAGTGATTCAGAAGAGAGTTTTGAGAGTGAGCTCTCACTGATGGAAAAGAAAGTCCATCTATCAGTTGTTGGCTCCAGTATTGTGCATGATTCAATGGATGAATCAGAAAATAGCAGTGACTTTAAATTCATGCACAAGCCAGATCAGGAAATTAGATCCTATCTGGATTCAAGAACTGGGGACTGTTCCACTTCTAGAAAACAGTCATCGAAAGAAGAGCTTAATAGATGTAAAAACATGTGTGCCTACCCAGCTCATAAAATTTCAAAAGCATTCTTGCCCCATTGGGCATATCAGATGTTTGACTCTTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAACCGAATAGTTGCAGTGCCTAAGATGGATAGTCTCGTTAAGAAGCCTGATGTGTTATCATTTCACATCGCCAGTAAAATACCTGTGTCTGAGTCTACAAGGCAGGAGCTTTTGGATATTGATGGCGTTGTATATAGGCTGCGTAGAGAAATTGAATTACTAGAAAAGATTGAGCTTATCCGGTGTAAGAGCTGCCAGACTATAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAGTGAGGGTCCTCTTAGTGCATATGTGAATTCAGGTGGTTATGTGCATGAGATAATGACTCTTTACAAGGCAAATGGTTTAGCTCTCATTGGGCCAGCAGTAGCAGAATACAGTTGGTTTCCTGGGTATGCGTGGACAATCGCTACTTGTGCAACATGTAAAACCCAAATGGGATGGCTTTTTACAGCCAGGAACAAAAAACTGAAACCCAGCTCTTTCTGGGGGATTCGAAGCTGTCAACTTGCAGCAGAAATACGCGGGAGCCTTTAA 1614 0.4238 MDDEERERLLERERLQIQVIRQLDLEDLEVEEVDHSGDDDDDYANEEYAQYLSQFTSPTPDPDSSVEFTFDTYIAPLHTYLGDVEDTRHRTALLDGGAVVNVPLFSLQGVVLFPGATLPLRVIEPRFVAAVEKALTQDNIPYTIGVIRIHRDTANLRMKSASIGTTAEIRQFGRLGDGTLNVVTRGQQRFRLRRTWNDVEGVPYGEIQIIEEDLPLRAPRVAFGKLAPLSNSQAVSHMVSPKYSHIKMQSSKNEESDSEESFESELSLMEKKVHLSVVGSSIVHDSMDESENSSDFKFMHKPDQEIRSYLDSRTGDCSTSRKQSSKEELNRCKNMCAYPAHKISKAFLPHWAYQMFDSYWLAQRAADMWNRIVAVPKMDSLVKKPDVLSFHIASKIPVSESTRQELLDIDGVVYRLRREIELLEKIELIRCKSCQTIIAKRSDMLVMSSEGPLSAYVNSGGYVHEIMTLYKANGLALIGPAVAEYSWFPGYAWTIATCATCKTQMGWLFTARNKKLKPSSFWGIRSCQLAAEIRGSL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01384 537 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 429 519 IPR004910 -
Cca03g01384 537 Gene3D Peptide methionine sulfoxide reductase. 423 536 - -
Cca03g01384 537 Gene3D - 357 422 - -
Cca03g01384 537 Gene3D - 82 210 IPR046336 -
Cca03g01384 537 ProSiteProfiles Lon N-terminal domain profile. 102 425 IPR003111 -
Cca03g01384 537 CDD CRBN_C_like 429 525 IPR034750 -
Cca03g01384 537 PANTHER CEREBLON 6 530 - -
Cca03g01384 537 SUPERFAMILY PUA domain-like 101 424 IPR015947 -
Cca03g01384 537 SMART lon_5 101 425 IPR003111 -
Cca03g01384 537 PANTHER BNAA09G40760D PROTEIN 6 530 - -
Cca03g01384 537 Pfam ATP-dependent protease La (LON) substrate-binding domain 102 425 IPR003111 -
Cca03g01384 537 ProSiteProfiles CULT domain profile. 426 533 IPR034750 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01384 K11793 - gmx:100779918 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01384 03 32066141 32071935 Cca03g01384 03 32066141 32071935 ECH