Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01383 ATGAGCGTTTCACATTTCGCGGTTCTATCGTGTTGTCGTCCACGCTTCGCCCCTTCGCTGTCGTGTGCTTCAACCCTCCTTCGTTCCCGCATCCACTGTTGCTCCACTCTCTCCGCTACTTCCACAGAGGCTCCCACTCCAACCACCCTAAAGAAACGAGTAGTATCGGGAGTTCAGCCCACGGGCTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCACTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACGTTACCTTATGATGTCCAACAATTATCTAAAGCTACAAGGTCAACTGCTGCTATTTATCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACGACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACATATCCTGTTTTGATGGCTTCTGATATACTTCTGTATCAGTCTGATTTTGTTCCTGTAGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTGGCTGAAAGAGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTGTTATATTTAAGGTTCCAGAGCCCCTTATTCCTCCCGCTGGTGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATGTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTCCCAGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGCAACAATCTTCTTTCCATATACCAACTTATTTCAGGAAAGACAAAAGAGGAGGTTGTGCTGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTTTTAACAGACGCCTTGATCGATCATTTGCATCCCATTCAGGTTCGCTATGAGGGAATCATGTCCGATTCAGGTTATTTAGATGAAGTTTTGGCACAAGGTGCTAGAAAAGCAGCAGATATAGCAGATACTACACTTCATAATGTTTACCAGGCAATGGGATTTTTGAGGAGACAGTGA 1182 0.4425 MSVSHFAVLSCCRPRFAPSLSCASTLLRSRIHCCSTLSATSTEAPTPTTLKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDVQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGVIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDVIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLISGKTKEEVVLECQNMNWGTFKPLLTDALIDHLHPIQVRYEGIMSDSGYLDEVLAQGARKAADIADTTLHNVYQAMGFLRRQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01383 393 Pfam tRNA synthetases class I (W and Y) 53 344 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca03g01383 393 SUPERFAMILY Nucleotidylyl transferase 52 389 - -
Cca03g01383 393 PANTHER BNAA04G15180D PROTEIN 20 389 - -
Cca03g01383 393 Hamap Tryptophan--tRNA ligase [trpS]. 51 390 IPR024109 GO:0004830
Cca03g01383 393 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 60 69 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca03g01383 393 CDD TrpRS_core 53 341 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca03g01383 393 TIGRFAM trpS: tryptophan--tRNA ligase 51 389 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca03g01383 393 Gene3D HUPs 54 388 IPR014729 -
Cca03g01383 393 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 20 389 - -
Cca03g01383 393 Gene3D - 249 359 - -
Cca03g01383 393 PRINTS Tryptophanyl-tRNA synthetase signature 64 80 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca03g01383 393 PRINTS Tryptophanyl-tRNA synthetase signature 114 133 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca03g01383 393 PRINTS Tryptophanyl-tRNA synthetase signature 191 212 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca03g01383 393 PRINTS Tryptophanyl-tRNA synthetase signature 256 266 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01383 K01867 - gmx:100780447 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01383 03 32052715 32062081 Cca03g01383 03 32052715 32062081 ECH