Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01379 ATGGCGGTTTCCGATTCTCCCAGCGGCGCCTCCACGCCGCCGCAGCAGGAACAACCCAACAACTACGCTTTCACCAAGCCTCTCTCTCTCGCCGGTCCCACCGACGCTGATCTCCAACGTAACCTCGAATTGGAGAAGTGCTTGCTCGATTCGGGGCTCTACGAGAGCAATGAAGAAGCCGCAGCGAGAAAAGAGGTTCTCCACCGCCTCGATCAGATTGTGAAAAGCTGGGTCAAGCAGTTGACGCGCCAACGTGGGTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGTTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCACAATATCCTGGCCGAAATGGAAGAAGTTACTGAACTGCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGGATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATCTCACATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTACACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGGTTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTTTACCCGAATGCAATCCCCAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGTTATGCTCTATAGAAGAGAATGAACTGGGATTCCCAATATGGGATCCTCGTAGGAACCCCCGAGACAGATTTCACACCATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGCTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGATCTTAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATATCTTTTTTGAGGCATATAAAAACTATTTACAAGTGGACATAATGGCATCAGACACAGATGATTTACTAGCGTGGAGGGGCTGGGTAGAATCACGGTTGAGACTGCTTACCCTGAAGATAGAGCGAGATACAAATGGGATGTTGCAGTGCCATCCTTATCCACATGAATATATAGACACATCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGCCTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTTAGACAAGACATAAATATGTACATGTACTGGAAGCCAGGGATGCAAATCTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCCGCATTTGTTTTTCCTGATGGTTACAAGCGCACTCGAATGCCAAGGCATATAAGCCAGCTGGCTGAAAAAACAGGTGATGACATCACAAAGTGCTACTCTGGGTCCAGTTCATCCGAAAGATGCATCAAGAGGAAAAACTACCCTGAAATGGTGGATAGGAAGCCAGACAAACCAGATAAGCGGGCATCTATTAGCCCGCAGAGGTTAGAATGTGTTTCTCCTGAATATTGTACTGGTAAATCAGTTGGTACAGCTCAAATGAGTATTGAGTGTATGGAAGGGGTTAGATTATCTGGTTCAACTACCAAGGATGCTAATAGCAATTGTGAAATTAAGTCATTGGATGCACTCCCAGGAAGCGGACTAAGTACTGAGATAGCCAACACGCAGATTAGTGAACCGGGCTTTGTTGATTCCAGACATGATATGTTGAAATCAAGGAGTGTAGAAGTTCCAAATGAGGTAAGCTGCTGA 1947 0.4453 MAVSDSPSGASTPPQQEQPNNYAFTKPLSLAGPTDADLQRNLELEKCLLDSGLYESNEEAAARKEVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYIFFEAYKNYLQVDIMASDTDDLLAWRGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQDINMYMYWKPGMQIFVSHVRRKQLPAFVFPDGYKRTRMPRHISQLAEKTGDDITKCYSGSSSSERCIKRKNYPEMVDRKPDKPDKRASISPQRLECVSPEYCTGKSVGTAQMSIECMEGVRLSGSTTKDANSNCEIKSLDALPGSGLSTEIANTQISEPGFVDSRHDMLKSRSVEVPNEVSC 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01379 648 CDD NT_PAP_TUTase 62 217 - -
Cca03g01379 648 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Cca03g01379 648 Pfam Poly(A) polymerase predicted RNA binding domain 432 502 IPR007010 GO:0003723|GO:0043631
Cca03g01379 648 Gene3D - 25 365 - -
Cca03g01379 648 SUPERFAMILY Nucleotidyltransferase 20 216 IPR043519 -
Cca03g01379 648 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Cca03g01379 648 PANTHER POLY A POLYMERASE 4 562 - -
Cca03g01379 648 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g01379 648 PIRSF PolyA_polymerase 10 615 IPR014492 GO:0004652|GO:0005634|GO:0043631
Cca03g01379 648 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Cca03g01379 648 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 495 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cca03g01379 648 Gene3D Poly(A) polymerase predicted RNA binding domain 370 485 - -
Cca03g01379 648 Pfam Poly(A) polymerase central domain 25 366 IPR007012 GO:0004652|GO:0043631
Cca03g01379 648 PANTHER NUCLEAR POLY(A) POLYMERASE 4 4 562 - -
Cca03g01379 648 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01379 648 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01379 Cca-Chr3 32004783 32011467 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01379 K14376 - gmx:100819294 1233.01