Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01378 ATGGACGACACTGTTCCTCAGAAGGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGACCGCGACAAAAGGTATACTTTAAATCAGATGATGTACATGCGTGCATCGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTTATAAGGGAAATTGTCTGTGGACTTTCTTACATGTACGGAGTTAACAAAGTCCTTGGCATAGATGGTGGTTATAGAGGTTTTTATTCCAAGAACACCATTACTTTAACACCTAAGGTGGTCAATGACATCCATAAGCGTGGTGGTACAATTCTTGGGACATCACGAGGGGGGCATGATACTGGCAAGATAGTTGACAGCATCCAGGATCGAGGGATTAATCAGGTTTATATTATTGGAGGAGATGGAACACAGAGAGGAGCATCTGTGATTTATGAGGAAGTTAGACGGCGGGGTCTGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGGTTATTGATAAATCCTTTGGTTTTGATACTGCGGTCGAGGAGGCTCAACGTGCCATTAATGCAGCACATGTTGAAGCTGAAAGTGTTGAGAATGGCATTGGTGTTGTAAAGCTAATGGGACGATATAGTGGTTTTATTGCAATGTATGCTACTCTTGCTAGCAGAGATGTGGACTGTTGCTTGATTCCAGAGTCACCTTTCTACCTTGAAGGTAAGGGTGGACTTTTTGAATTTGTTGACAAAAGGCTGAAAGAAAATGGGCATATGGTCATAGTCATAGCAGAGGGAGCAGGACAAGATCTTCTTACAGAAAGTATGCAGGCCATGGACCAGAAAGATGCTTCTGGAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGGATCACTTTGCAAAGAAGGATACGATTGACATCAATCTTAAATATATAGATCCAACTTACATGATCCGGGCAATTCCAAGCAATGCATCAGATAATGTCTACTGCACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTATACTGGGTTTACAAGTGGACTGGTCAATGGTAGACATACTTATATTCCATTCAATAGAATCACCGAGAAGCAGAACAAGGTGGTGATTACTGACAGAATGTGGGCAAGACTCCTTTCTTCAACCAACCAGCCAAGCTTTTTGAGCCCTAAAGATTTAGATGAAGCCAAGAAAGCCAAAGAACCTCCAACCCAATTGTTAGAAGGGAACAATTGCAATGATGTTGATGAAGCCGATGAAAAAGAACAACCTCCCACTCAGTTGTTCGAAGGGGACAATTTTAAATATGAACAAGAATCAGGAAACCACGCAGACAATAGTATCAAGACAGAAAATTAG 1389 0.4226 MDDTVPQKVVVHKDSPRGVHFRRAGPRQKVYFKSDDVHACIVTCGGLCPGLNTVIREIVCGLSYMYGVNKVLGIDGGYRGFYSKNTITLTPKVVNDIHKRGGTILGTSRGGHDTGKIVDSIQDRGINQVYIIGGDGTQRGASVIYEEVRRRGLKVAIAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFVDKRLKENGHMVIVIAEGAGQDLLTESMQAMDQKDASGNKLLQDVGLWISHKIKDHFAKKDTIDINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGYTGFTSGLVNGRHTYIPFNRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDLDEAKKAKEPPTQLLEGNNCNDVDEADEKEQPPTQLFEGDNFKYEQESGNHADNSIKTEN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01378 462 MobiDBLite consensus disorder prediction 446 462 - -
Cca03g01378 462 Pfam Phosphofructokinase 40 345 IPR000023 GO:0003872|GO:0006096
Cca03g01378 462 MobiDBLite consensus disorder prediction 396 462 - -
Cca03g01378 462 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 1 398 IPR012004 GO:0003872|GO:0005524|GO:0006096
Cca03g01378 462 SUPERFAMILY Phosphofructokinase 17 404 IPR035966 GO:0003872|GO:0006096
Cca03g01378 462 Coils Coil 181 201 - -
Cca03g01378 462 PIRSF ATP_PFK_TP0108 1 402 IPR012004 GO:0003872|GO:0005524|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 158 175 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 41 60 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 176 194 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 254 266 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 197 213 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PRINTS ATP-dependent phosphofructokinase family signature 125 141 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca03g01378 462 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 427 - -
Cca03g01378 462 PANTHER - 1 427 - -
Cca03g01378 462 Gene3D - 34 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01378 Cca-Chr3 31993704 32000463 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01378 K00850 - gmx:100818755 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01378 03 31993704 32000463 Cca03g01378 03 31993704 32000463 ECH