Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01367 ATGACTGCTTTTGGGTCACCTGGTTTGTTCTATCATTCTGATTCGACACTCCTCACAGTAGAAACGAAAGGATTAGGATGCTTTCGTTGTCATTTGTGGCCAAAAGGTTGTAATAAATATCTACTTGATCTTGTCACACTGCAAGGGTGGAGAAAGAATTCTTCTCCAACGTCTTCCGTCGTTCTCTGCTCTTCATCGTCGAGGCCGTCGCTGTTTTGTCTCCGCGTGAATCTCCAAGTTGCAATGGCGTCTTCTAAGAGGCCAAATGCGGAGTCGAATGGGAAAGGGAAACGCCAAAAATCTTCAGGCGGTTTTTCGCCGTTGGATGTTTCTCCGGGGAGCGTGGTGTTCCGTTTGCTCTGTCCCGTTTCTAGAATAGGTGGTGTTATTGGCAAAGGTGGTGCTATCATATCGCAAATTCGCCAAGAGACCGGTGTGAAGGTGAAGATTGAGGAAGCTGTGTCTGGGTGCGATGAAAGGGTTATTACTATATCAGGTTCTGATAAAGAGGCTGAAGAAGATACTGCTGGGAAGGGAAGGGAGGTTAatgaggatgaggctgggaatgaggggaaggatgaggaggagaaggatggtggcaatggggatgGTAATGAAGTTAAAGGTTCTGTTCCAGTGGAAGATTCGCAGAGTGACAAGGGTAATTCCGAGAAGGGTAATTCGGCTATTCGGAAGGCTATCTCACTGGTTTTTGAGAGGATAGTCGAGGGAGTAGAGGAGGCAACTGAGGGGGATGAAGAAAACAATAAATCTTCTTGCATTGTTCTTAGGTTACTTGTTCTTACTACTCAAGTTGGTTGCCTCCTAGGAAAGGGTGGCAGTGTGATAAAGAGAATGGCAGCTGAGAGCGGGGCACAGATTCGGATCCTTCCTAAGGACAAACTTCCGGCGTGTGCAACGGCTTCTGATGAGACAGTGCAGATCACAGGGGGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAGCTCTTGGAAAATCCACCTCGGGATCACGAGTCCATGTCTGCAAATTTTACAGGGCCATCAACTCATTCATTTGGGCAATTCCCATCACACAACCGTTCTTTTCCTGCTGGGCCTCATGATATTTCTTCTTTTCATTCTGCCCCCCCTTTGATTACCAAATTTCATGAAGCTGCCATCCATGGTCGCACAAGGCCTGTACAGGAAATGCTTACTTTTCGTTTATTGTGTCCTGCGGATAGGGTAGGAAATATAATTGGTAAAGGTGGGGCAATCATAAGGTCAGTTCAGCAAGAGACAGCAAGTGAAATCAAGGTTGTAGAAGGCCCTCCAGATTCAGAAGACTGTGTTGTTGTTATATCTGGTCCAGCGCACCCAGATGATAGAGTATCCCCGGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGGCTATACCTGATGGCAAAGAGCATACTATATTAGCAAGGTTTCTGGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGAAATCAGGGGCCCATATTCGTATATTAGGAAAGGATAAGGTTCCTAAGTGTGCTTCTGAAGATGAAGAAGTAATTCAGGTAAATGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAAATAACCACTAGATTAAAACATCATTTCTTCCGCGATTCATATCCATCTGCTAATTATCCTTTGAATTCTCCATTTCTGGATCAACTCCCTCCGTTTCCACCATATCTAGGAAGGCGTGGACTTTCACCTCCTGGAATGTATTCTGACCTAGGGCCTCCACCACCACATATGGGTTTTCATCTTGATGACCGCCCTCCTTTTTTGAATAATATACATAGACCCGGCCTTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTCAGGGGATACTTGAAGGTGGTGCACCCATTGGCATGCCAGACTTTCCAGGAGGTCCTCCCAGGAGAATTTCAGCATTTGCAGGAGGGAGCCAACCAATTATCACAAGTACGACTGTTGAAGTTGTTGTTCCTCGAGCACTGGTGCCTGTAATATATGGGGAAGATGGTGAATGTCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATCACTGATCCAAAGCCTGGAGCTGTGGAAACAAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTGATGAGTGAGAGGGAGTCTGGTTGA 2262 0.4408 MTAFGSPGLFYHSDSTLLTVETKGLGCFRCHLWPKGCNKYLLDLVTLQGWRKNSSPTSSVVLCSSSSRPSLFCLRVNLQVAMASSKRPNAESNGKGKRQKSSGGFSPLDVSPGSVVFRLLCPVSRIGGVIGKGGAIISQIRQETGVKVKIEEAVSGCDERVITISGSDKEAEEDTAGKGREVNEDEAGNEGKDEEEKDGGNGDGNEVKGSVPVEDSQSDKGNSEKGNSAIRKAISLVFERIVEGVEEATEGDEENNKSSCIVLRLLVLTTQVGCLLGKGGSVIKRMAAESGAQIRILPKDKLPACATASDETVQITGGVEVVRKALQSVSQQLLENPPRDHESMSANFTGPSTHSFGQFPSHNRSFPAGPHDISSFHSAPPLITKFHEAAIHGRTRPVQEMLTFRLLCPADRVGNIIGKGGAIIRSVQQETASEIKVVEGPPDSEDCVVVISGPAHPDDRVSPVQEAVFRVQTRIAKAIPDGKEHTILARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALLQITTRLKHHFFRDSYPSANYPLNSPFLDQLPPFPPYLGRRGLSPPGMYSDLGPPPPHMGFHLDDRPPFLNNIHRPGLPPHISERKPWGPQGILEGGAPIGMPDFPGGPPRRISAFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01367 753 CDD KH-I 680 743 - -
Cca03g01367 753 ProSiteProfiles Type-1 KH domain profile. 260 329 - -
Cca03g01367 753 Gene3D K Homology domain, type 1 113 174 IPR036612 GO:0003723
Cca03g01367 753 CDD PCBP_like_KH 116 167 - -
Cca03g01367 753 Gene3D K Homology domain, type 1 258 338 IPR036612 GO:0003723
Cca03g01367 753 Gene3D K Homology domain, type 1 484 562 IPR036612 GO:0003723
Cca03g01367 753 Gene3D K Homology domain, type 1 400 478 IPR036612 GO:0003723
Cca03g01367 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 109 169 IPR036612 GO:0003723
Cca03g01367 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 481 569 IPR036612 GO:0003723
Cca03g01367 753 CDD PCBP_like_KH 403 472 - -
Cca03g01367 753 CDD PCBP_like_KH 490 556 - -
Cca03g01367 753 ProSiteProfiles Type-1 KH domain profile. 486 555 - -
Cca03g01367 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 678 747 IPR036612 GO:0003723
Cca03g01367 753 SMART kh_6 400 480 IPR004087 GO:0003676
Cca03g01367 753 SMART kh_6 259 334 IPR004087 GO:0003676
Cca03g01367 753 SMART kh_6 485 560 IPR004087 GO:0003676
Cca03g01367 753 SMART kh_6 677 747 IPR004087 GO:0003676
Cca03g01367 753 SMART kh_6 113 183 IPR004087 GO:0003676
Cca03g01367 753 Pfam KH domain 680 743 IPR004088 GO:0003723
Cca03g01367 753 Pfam KH domain 490 555 IPR004088 GO:0003723
Cca03g01367 753 Pfam KH domain 263 329 IPR004088 GO:0003723
Cca03g01367 753 Pfam KH domain 403 455 IPR004088 GO:0003723
Cca03g01367 753 Pfam KH domain 117 171 IPR004088 GO:0003723
Cca03g01367 753 CDD PCBP_like_KH 262 330 - -
Cca03g01367 753 Gene3D K Homology domain, type 1 677 750 IPR036612 GO:0003723
Cca03g01367 753 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 83 614 - -
Cca03g01367 753 MobiDBLite consensus disorder prediction 164 227 - -
Cca03g01367 753 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 83 614 - -
Cca03g01367 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 252 338 IPR036612 GO:0003723
Cca03g01367 753 ProSiteProfiles Type-1 KH domain profile. 401 468 - -
Cca03g01367 753 ProSiteProfiles Type-1 KH domain profile. 678 742 - -
Cca03g01367 753 MobiDBLite consensus disorder prediction 164 203 - -
Cca03g01367 753 MobiDBLite consensus disorder prediction 84 106 - -
Cca03g01367 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 401 487 IPR036612 GO:0003723
Cca03g01367 753 ProSiteProfiles Type-1 KH domain profile. 114 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01367 Cca-Chr3 31824139 31835519 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01367 K21444 - gmx:100777433 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01367 03 31824139 31835519 Cca03g01367 03 31824139 31835519 ECH