Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01366 ATGAATCCTGATCAGTTTCAGAAGAGTAGCATGTTCATAGAAACCCCTGAAGCTTTTGCTGAtggtggcaaaaacttcgacgatgatggacgagccaaaagaactgGAACATGGGTGACTGCGAGTGCCCACATCATAACAGCAGTGATAGGATCTGGAGTGTTGTCACTTGCATGGGCAATTGCACAAATGGGTTGGGTGGCTGGTCCTGCAGTTCTCTTTGCCTTCTCTTTCATCACATACTTCACCTCCACTCTTCTAGCGGATTGTTATCGTTCACCTGACCCTGTTCATGGCAAGAGAAACTACACCTATTCCGACGTTGTCAGATCTGTCCTAGGGGGGAGGAAATTTCAGCTGTGTGGATTAGCTCAGTATATAAATCTTGTCGGTGTAACAATCGGTTACACAATAACAGCTTCAATTAGTATGGTGGCGGTGAAAAGGTCAAACTGTTTTCACAAACATGGTCATCATGTTAAGTGCTATACGTCCAACAACCCTTTCATGATCCTCTTTGCCTGCATCCAAATCGTCCTAAGTCAGATACCGAATTTCCATAAGCTATGGTGGCTCTCCATTGTTGCAGCAGTCATGTCTTTTGCTTATTCCTCCATTGGTCTCGGCCTCTCCGTAGCTAAAGTGGCAGGTGGCGGAGAACATGTACGGACATCCTTAACGGGGGTGCAAGTTGGGGTGGACGTTACAGGATCCGAGAAGGTGTGGAGGACGTTTCAAGCTATTGGTGACATTGCCTTTGCTTACGCTTACTCTAACGTCCTCATCGAGATACAGGATACCCTGAAATCAAGCCCTCCGGAGAACAAGGTCATGAAAAGAGCAAGTTTGATTGGCATCTTGACTACAACCTTGTTTTATGTGCTATGTGGCTGCATAGGTTATGCAGCATTTGGAAACGATGCACCAGGAAATTTCCTCACAGGATTCGGATTCTACGAGCCCTTTTGGCTAATAGACTTTGCCAACATCTGCATAGCCGTGCACTTAGTTGGGGCATATCAGGTCTTCTGCCAGCCCATATTTGGGTTTGTAGAAAACTGGAGTAAGGAAAGATGGTCCAATAGCCAATTTGTAAATGGGGAGCACGCTGTGACCATTCCATTATGTGGAACCTACTATATGAACTTCTTCAGGATGGTGTGGAGAACAACATATGTCATCATCACTGCTTTGATAGCTATGATGTTTCCATTCTTCAATGACTTCCTAGGCCTCATTGGTTCACTGTCCTTTTGGCCATTAACCGTTTACTTCCCCATAGAGATGTACATTAAGCAAACCAAGATGCAAAGGTTTTCCTTCACGTGGACATGGCTCAAAATATTGAGCTGGGCTTGCTTGATCGTTTCGATTATCTCAGCTGCTGGTTCCATCCAAGGCCTCGCTCAAGATCTCAAGAAATACCAACCCTTCAAGGCCCAGCAATAA 1449 0.4396 MNPDQFQKSSMFIETPEAFADGGKNFDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQMGWVAGPAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYSDVVRSVLGGRKFQLCGLAQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHHVKCYTSNNPFMILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEHVRTSLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVMKRASLIGILTTTLFYVLCGCIGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFGFVENWSKERWSNSQFVNGEHAVTIPLCGTYYMNFFRMVWRTTYVIITALIAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQTKMQRFSFTWTWLKILSWACLIVSIISAAGSIQGLAQDLKKYQPFKAQQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01366 482 Pfam Transmembrane amino acid transporter protein 34 468 IPR013057 -
Cca03g01366 482 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 13 475 - -
Cca03g01366 482 PANTHER OS05G0424000 PROTEIN-RELATED 13 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01366 Cca-Chr3 31820889 31825340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01366 7 480 Organic Solute Cotransporters AT5G49630 76.987 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01366 K24917 - gmx:100777963 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01366 03 31820889 31825340 Cca03g01366 03 31820889 31825340 ECH