Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01357 ATGTGTAATCCAAAAGCACCCTCATCATCAACATTTCTGTGTCCCACAAAAAACCACATCATAACTCCGGAGCCCAAAGAGATAAATGACGTCCCTCCCCACGACGATCAAGCTGAAGACGAACTTGAGAGATGGCCAACTCCCAATGAGGTGATAGAAGAAATGAAGGCCTTAGGGAAGATATCAGGGCCAACAGCGGTGACGGGGTTGCTCCTATACTCCCGGGCCATGATCTCGATGCTGTTCCTGGGGTACCTCGGGGAGATGGAGCTGGCGGGAGGGTCCCTCTCGATAGGGTTCGCGAACATCACGGGGTACTCGGTGATATCGGGCCTGGCCATGGGAATGGAGCCCATCTGCGGGCAGGCCTACGGCGCGAAACAATTAAAAACTCTGGGCCTAACCCTGCAGAGAACGGTCCTCCTGCTGCTCTCAACCTCCCTCCCCATCTCCCTCACGTGGCTGAACATGAAGAGCATCCTCTTATGGTGCGGGCAGGACCAGCGAATCTCCTCCACCGCACAAACCTTTATACTCTTCTCCATCCCCGACCTCTTCCTCCTCTCGCTCCTCCACCCTCTCCGCATCTACCTCAGAACACAAACCATCACATTGCCCTTAAcctactgctccgccctctccctcctcctccacctgcctctcaacttcctcctcgtcGTTCACTTCAAAATGGGAGTCTCCGGAGTCGCCATAGCCATGGTCTGGACCAAcctcaacctcttcctcttcctctcctccttcGTTTACTTCTCCGGAGTCTACAAAGACTCCTGGGTCCCACCTAGCACCGACTGCGTCAAAGGCTGGGGTTCTCTCCTTGCACTCGCCATCCCCACCTGCGTCTCCGTTTGTTTAGAATGGTGGTGGTACGAACTCATGATTCTCCTCTGTGGACTTCTCCTCAACCCCAAGGCCACCATTGCTTCCATGGGAATACTCATTCAAACCACTTCCTTGGTTTATGTTTTTCCTTCTTCCCTCAGCCTCGCTGTCTCCACCAGAGTCGGTAACGAGCTCGGCGCTAACCGCCCCGCCAAGGCTCGCATTTCCATGATAGTCTCGCTCGCCTGCGCCCTCGCCCTGGGTGTCTCCGCCATGATATTCACCACCTTGATGAGACACCGCTGGGGGAGATTCTTCACCTCCGACGAGGAGATTCTCGCCCTCACAGCCGTCGCTTTGCCCATTGTGGGCCTGTGCGAGCTCGGGAACTGCCCGCAGACCACGGGCTGCGGCGTGCTACGTGGCAGCGCCAGGCCCACTGTTGGCGCCAACATTAACTTGGGCTCGTTTTACCTCGTCGGCATGCCTGTGGCGGTTCTTCTTGGGTTCGTGGCGAAAATGGGCTTTCCTGGGCTGTGGCTTGGGTTGCTTGCGGCCCAAGGCTCCTGCGCGGGTCTCATGCTATTCGTTCTCTGCAGCACCGACTGGAAGGCGCAAGTGCGAAGGGCCAATGAGCTGACCAAGACTGGGAAATTGTTGCCTACCACGGACTCTAACAATAACATTAACATTAATGTTTGTCTTCCGGAGATTGTTGTCGCGGATGATGAGGCTACCATTACCACCAAGACACCTCTTGAAACAGACCCTCTCATCACACACACTCTAaattaa 1638 0.5226 MCNPKAPSSSTFLCPTKNHIITPEPKEINDVPPHDDQAEDELERWPTPNEVIEEMKALGKISGPTAVTGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQLKTLGLTLQRTVLLLLSTSLPISLTWLNMKSILLWCGQDQRISSTAQTFILFSIPDLFLLSLLHPLRIYLRTQTITLPLTYCSALSLLLHLPLNFLLVVHFKMGVSGVAIAMVWTNLNLFLFLSSFVYFSGVYKDSWVPPSTDCVKGWGSLLALAIPTCVSVCLEWWWYELMILLCGLLLNPKATIASMGILIQTTSLVYVFPSSLSLAVSTRVGNELGANRPAKARISMIVSLACALALGVSAMIFTTLMRHRWGRFFTSDEEILALTAVALPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLGSFYLVGMPVAVLLGFVAKMGFPGLWLGLLAAQGSCAGLMLFVLCSTDWKAQVRRANELTKTGKLLPTTDSNNNININVCLPEIVVADDEATITTKTPLETDPLITHTLN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01357 545 PANTHER PROTEIN DETOXIFICATION 32 508 - -
Cca03g01357 545 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 508 - -
Cca03g01357 545 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
Cca03g01357 545 Pfam MatE 285 448 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca03g01357 545 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca03g01357 545 TIGRFAM matE: MATE efflux family protein 76 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01357 Cca-Chr3 31680895 31683151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01357 K03327 - gmx:100788339 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01357 03 31680895 31683151 Cca03g01357 03 31680895 31683151 ECH