Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01356 ATGGCGTCGTTTCGACGGACTCTGTCGCCGGCGTATCACGATCGCCAGTACCTAAACGGCGCGTTTTCCGTTTCCTCTCCGGCGCACAAGCTCGCCAACGCGAACGCCAAGTACTCGTCGCCGCTGCcggcgctggtggcggcgctgcggcggctggccggcggaaggcacggtcggaaggggcagtggaggcgcgcggcgTTCAGGTGCGTGCTGTGCTTCTTCGTAGGGTTTTTGTTAGGAATGTTTCCGTTCGGCCACGTGGCGGAGGACGTTCGCTCGCACGAAATCTCGTTCGAGATGAAGTCGCCGCCGCACGCGGAGGCGCAGCGGCTCCGGGGGGGGCGCGGTCGCGTTCTGCGGAATCGCGGCGTGGAGGAGGGTTTGGTGATCGATCCGGTGAGTTTGAGCGCGGAGAGGGAGAGGCAGAGCGAGAGGTTCGATTTCGCGCCGAGGAAGCCGTTGATTGTGGTGACGCCGACGTACGGACGGGCTTTTCAGGCGTATTTCCTGAACAGGCTGGCGCAGGTTCTGCGGCTGGTGCCGCCGCCGGTGGTGTGGGTGGTGGTGGAGATGAACGCGGCGTCGATGGAGACGGCGGAGGTGCTGCGGAAGACGGGCGTGATGTATAGGCATTTGGTGTGCAAGAAGAATTCGACGGATGTGAAGGACAGAGGGGTTCATCAGAGGAACACGGCGTTGGAGCACATTGAGCGCCATAGGCTTGATGGGATTGTTTACTTTGCGGACGATGATAATGTGTATTCTCTCGAGTTATTCGATGCCTTGAGAGACATCAGCCGATTTGGCACTTGGCCTGTTGCCATGCTTGCACCGAGCAAGAACAAGGCCATTTTGGAGGGGCCCGTATGCAATGCAAGCCAAGTGATTGGATGGCACACTAATGAAAAAAGTAGAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGCGGCGACCTTCTTCAAATCCCATACGACAGTTAGACACAGTAAAGGAGGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTGCTGGGTGTTCAAAAATATTGAACTGGCATCTCCATTTGAATGCTCATAATATAGCTTACCCAAAAGGCTGGGTGCTTCAGAAAAATCTAGATGCTGTCATACCTGTCAAGTAA 1221 0.5045 MASFRRTLSPAYHDRQYLNGAFSVSSPAHKLANANAKYSSPLPALVAALRRLAGGRHGRKGQWRRAAFRCVLCFFVGFLLGMFPFGHVAEDVRSHEISFEMKSPPHAEAQRLRGGRGRVLRNRGVEEGLVIDPVSLSAERERQSERFDFAPRKPLIVVTPTYGRAFQAYFLNRLAQVLRLVPPPVVWVVVEMNAASMETAEVLRKTGVMYRHLVCKKNSTDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLELFDALRDISRFGTWPVAMLAPSKNKAILEGPVCNASQVIGWHTNEKSRRLRRFHVDMSGFAFNSTILWDPKRWRRPSSNPIRQLDTVKEGFQETTFIEQLVEDESQMEGSPAGCSKILNWHLHLNAHNIAYPKGWVLQKNLDAVIPVK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01356 406 PANTHER GLYCOSYLTRANSFERASES 1 403 - -
Cca03g01356 406 CDD GlcAT-I 153 384 IPR005027 GO:0015018|GO:0016020
Cca03g01356 406 Pfam Glycosyltransferase family 43 174 382 IPR005027 GO:0015018|GO:0016020
Cca03g01356 406 SUPERFAMILY Nucleotide-diphospho-sugar transferases 154 399 IPR029044 -
Cca03g01356 406 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 154 401 IPR029044 -
Cca03g01356 406 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 403 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01356 Cca-Chr3 31645573 31649713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01356 1 406 Glycosyltransferase AT1G27600 62.990 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01356 K20869 - gmx:100809892 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01356 03 31645573 31649713 Cca03g01356 03 31645573 31649713 ECH