Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01355 ATGGCCGCTGCTACCAGGGACCAAGCCCTCTCTCTCCTCGCCGCCGCGAATAACCACGGCGACCTCGCCATTAAAACCTCGTCCTTGAAACAAGCCAAAGACCTTCTTCTTTCCATCGACCCCTCTCTCGCCGCCGACCTCTTCCCTTACTTGCTTGAGCTTCAGTCTTCTCCCGAAAGCCTCGTTCGCAAATTGCTCATTCAGATAATTGAAGAAATTGGTTTTAAAGCTGTTGAGCACTCTCCTACGCTCATATCTGTAATATTAACATTTTTACAAGACAGTGATGTAATCGTAGTAAAGCAGTCTATTGTTAGTGGCACTAATATCTTCTGTAGTGTTTTTGAGGAGTTGATTGTGAAGTTTCAACAGTATGGTAAAGTTGAGAGGTGGCTGGAAGATATTTGGATGTGGATGCTCAAGTTCAAGGATGCAGTTTTTGGGATTGCTCTGGAGCCTGGTTCTGTTGGAATAAAGTTGCTGGCACTGAAATTCTTGGAAACATTTGTACTACTCTTTACATCTGACATCAGTGATACTGAGAAATTATCCTCAAAAGGAGTTAGGAAAGCTGTTAATGTCTCATGGTTGGTTGGTGGTCACCCTCACCCTGTTCTTGATCCAGTGGTGCTCATGTCAGATGCAAATAGGACTATTGGCATTCTATTAAATTTATTGCAGGCTGTTGGCAGTCTTCCTGGTTGCTTGACTATTACTGTTGTAAATTGTTTAGCAGCCATTGCAAGGAAAAGGCCACAACACTATGATACTATTCTTTCAGCATTGCTTGATTTTAGTCCAAATTTTCAAACAACGAAAGGATGTCATGCTGCTAGTATTCAGTACTCCTTAAGAACAGCTTTTTTGGGATTTCTTAGGTGCACTTATTCACCAATACTTGAGTCAAGAGAAAGACTAATGAGGAGCCTGCGAGCTATAAATGCAGGGGATGCTGCTGATCAGGTCATTCGTCAAGTGGACAAAATGATTAAAAATGGTGACCGTTCTACCCGTGATGCACGAGTTAGCAGGGATGATCAACCATCAACTCAGTCACCTGTTTCAGAGGAATTATCTAGAAAAAGACCAGTTCCTCTAGATAATGAACTGCTGGCCAATGGTCATGAAACCATTTCTAAGCGGATCCGTTCTGGTCCTGACTTTCACCCTACTGTAGCAGCTCAAATAAATGATTCTGGGCAGGATCTTAACTCTGTAAATGGAGTATCACCTAATGTTCCTGTGCTGGATAGTGAACTAACTGCGGTGGAGCAAATGATTGCTGTGATTGGTGCTTTACTTGCTGAAGGAGAGAGAGGTGCTGAATCTCTTGAGATCCTCATTTCAAAGATTCATCCTGATCTGTTGGCTGATATTGTCATAACTAATATGAAGCACTTGCCAAAGGCTCCCCCATCACTAGTGAGGGTGGGGAATTTACCAGTATCACGACAATTAAGCACCCAAGTCAGTCAACCACAGGTTATGGCAACTTCTGTTCCAATAAATTCCGTCCAATCCTTGTCTGGTACTGCCCAAACATCATTCCCTTCAACTACGGCCACTGTCACAGCTACTGCTATGGCCACTACTTCATTGCCATCTGACACCTCTAACATCAGTAACCAGCCTGCTGATTCTAAACGTGATCCACGACGGGATCCTCGGCGCCTGGATCCACGGCGTGTAGTGGTAACTCCTGGAGGAGCAACGGTACCAATTGTGGATGATACTGGGGCAACAAAATTAGATTTTGATGAACCTTTGTCTTCCATTAAGCCTATTTCACATCCTGCCGTGACTGCTGACGACAATACTCCATCAGATCTAACAGTCAAAATAAAAAGTGATGATATCTCTGAAGCTTCCCCAGTTTTAGAACCTGATCGGATAAATCCGAAAACTGAAGTTCTGGAAAGGCCCGGAGATATTCATTGTATTACAGAAGCAGATGCTTCCGTGGATCCCTCACCGTCTTCTACTGATTTAAGAGATGAAGATCCGAGTACAGTGAAGCTTTCAGATGATACTGAAACAATTGGGATAGATTCATCATCTAATGAGTTTGATCAGTTTTCTATTGATGTTCAAGTTGAATCTACCTTGGAAGATACCTGTCTGGAGTTACCACAGCTTCCACCTTATGTTGAACTATCCAAAGAACAGGAAAGTAAGGTGAAAAACATGGCTGTTAGGCATATAATTGATTCATACAAAAATTTGCATGGGACAGATTGTCAGCAGTTTTGCATGCCACTTCTTGCTCGACTAGTAGCTCAGATTGATGATGACGACGAGTTTATTAAGTTGCTGCAAAAACACATCCTGGAAGACCACTGGCGAAAGGGGCATGAACTTGTACTGCATGTTTTGTACCATCTGCATTCCCTCACGATATTGGATTCAGCTGGAAATACTTCATCTTCTGCTATTTTATATGAAAAATTTCTCTTGGGAGTGGCCAAAACTTTGTTGGATTCTTTTCCTGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTACCACTTTTGCCAGAATCGTCCTTGAAGATTTTGAATGATCTCTGCTATTCCGATGTTATTGGTCATGATGGAAAAATTATCCGTGACATTGAACGTGTGACTCAAGGCCTTGGTGCTATTTGGAGTTTAATTTTGGGGCGTCCACAAAATCGCCAAGCCTGCTTAGGAATAGCATTGAAGTGTGCTATCCACCCACAGGATGAGATTCGAGCAAAAGCTATTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAGTTACGTATCTGGAGATGTTGAAAAATTTGCCACAGAAATGCTGCTTTCTGCTGTACACCATGAAGTTTCAGATACAGGTCTTTTGCAATCTGCACCAACTGAACAAAGAGCCGAGGCAGAGGTTGAAAGTCATGAAACAAGTTGTACTTCACAGGTTTCAGAGTCCACAATTTCTGAAAATGACTCTGCTAGAGTTGCTAAACCATTGAATCAAAGTGGTCCATCTATGTCATTTTCTGAAGCTCAACGCCTCATTTCTTTGTTTTTTGCTTTATGTACAAAGAAACCCAGTCTTCTTCAGATTGTATTTAATGTGTATGGGCAAGCCCCAAAAATTGTAAAACAGGCTTTTCACCGCCACATTCCTATTGTTGTGAGGGCGTTAGGGCATTCTTATACTGAATTGCTCCGTATCATATCTGATCCACCACAAGGAAGTGAAAATCTTCTAACCCTGGTACTGCAAATATTGACACAAGACACAACGCCATCTTCTGATTTGATATCTACAATTAAACGTTTATATGAAACTAAATTTAGAGATGTTACAATTCTTGTTCCATTATTGTCTTCGCTTTCAAAACAGGAGGTTTTACCAATATTCCCTAGGCTTGTTGATCTTCCATTGGAAAAGTTTCAAAGGGCACTTGCTCACATACTACAGGGTTCAGCTCATACAGGTCCAGCTTTAACTCCTGTAGAAGTTTTGGTTGCAATCCATGGAATTGTTCCAGAGAAAGATGGCCTTGCACTTAAGAAGATAACAGATGCTTGCTCGGCTTGCTTTGAGCAACGTACAGTGTTCACGCAACAGGTTCTGGCAAAGGCATTGAACCAGATGGTTGATCAAACTCCACTGCCTCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCAGCACTGGTTGATTTTGTCATGGAGATACTCTCAAAACTTGTGACTAAACAGGTGTGGCGAATGCCAAAACTTTGGGTTGGTTTCTTAAAATGTGTATATCAGACACAGCCACGTTCTTTTCATGTATTATTGCAGTTGCCACCTCAACAACTGGAAAGTGCACTCAACAGGCACGCTAATCTCAGAGGTCCCCTTGCTTCTTATGCCAGCCAGCCAACTGTAAAATCATCACTTAGTAGATCAACTTTAGCAGTACTTGGTCTTGCAAATGAAACTCATGTGCAGCAACATTTGTCAACTTCGTTACACCCTTCTGACACAAGTTCTTCAGTTCACGGAGCAACTCTGACGTGA 4041 0.4214 MAAATRDQALSLLAAANNHGDLAIKTSSLKQAKDLLLSIDPSLAADLFPYLLELQSSPESLVRKLLIQIIEEIGFKAVEHSPTLISVILTFLQDSDVIVVKQSIVSGTNIFCSVFEELIVKFQQYGKVERWLEDIWMWMLKFKDAVFGIALEPGSVGIKLLALKFLETFVLLFTSDISDTEKLSSKGVRKAVNVSWLVGGHPHPVLDPVVLMSDANRTIGILLNLLQAVGSLPGCLTITVVNCLAAIARKRPQHYDTILSALLDFSPNFQTTKGCHAASIQYSLRTAFLGFLRCTYSPILESRERLMRSLRAINAGDAADQVIRQVDKMIKNGDRSTRDARVSRDDQPSTQSPVSEELSRKRPVPLDNELLANGHETISKRIRSGPDFHPTVAAQINDSGQDLNSVNGVSPNVPVLDSELTAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKAPPSLVRVGNLPVSRQLSTQVSQPQVMATSVPINSVQSLSGTAQTSFPSTTATVTATAMATTSLPSDTSNISNQPADSKRDPRRDPRRLDPRRVVVTPGGATVPIVDDTGATKLDFDEPLSSIKPISHPAVTADDNTPSDLTVKIKSDDISEASPVLEPDRINPKTEVLERPGDIHCITEADASVDPSPSSTDLRDEDPSTVKLSDDTETIGIDSSSNEFDQFSIDVQVESTLEDTCLELPQLPPYVELSKEQESKVKNMAVRHIIDSYKNLHGTDCQQFCMPLLARLVAQIDDDDEFIKLLQKHILEDHWRKGHELVLHVLYHLHSLTILDSAGNTSSSAILYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLLPESSLKILNDLCYSDVIGHDGKIIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAIHPQDEIRAKAIRLVTNKLFQLSYVSGDVEKFATEMLLSAVHHEVSDTGLLQSAPTEQRAEAEVESHETSCTSQVSESTISENDSARVAKPLNQSGPSMSFSEAQRLISLFFALCTKKPSLLQIVFNVYGQAPKIVKQAFHRHIPIVVRALGHSYTELLRIISDPPQGSENLLTLVLQILTQDTTPSSDLISTIKRLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTVKSSLSRSTLAVLGLANETHVQQHLSTSLHPSDTSSSVHGATLT 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01355 1346 Gene3D - 1 345 IPR011989 -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 329 345 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 1326 1346 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 530 561 - -
Cca03g01355 1346 SUPERFAMILY ARM repeat 11 926 IPR016024 -
Cca03g01355 1346 Pfam Symplekin tight junction protein C terminal 1108 1286 IPR022075 -
Cca03g01355 1346 Pfam Symplekin/PTA1 N-terminal 96 320 IPR032460 -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 971 990 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 968 990 - -
Cca03g01355 1346 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1322 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 329 366 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 650 684 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 530 545 - -
Cca03g01355 1346 MobiDBLite consensus disorder prediction 546 561 - -
Cca03g01355 1346 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01355 Cca-Chr3 31618744 31642659 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01355 K06100 - gmx:100789876 2281.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01355 03 31618744 31642659 Cca03g01355 03 31618744 31642659 ECH