Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01354 ATGGAAGGTTGGGACCCGAACACGAAGTCGACTTTGACACAGATCCCATTGCTGACGAGGAAGGCGGGTCCACGTGACGGCGCGGCATGGACGCAGAGGCTGAAGGAGGAGTACAAGTCTCTCATTGCCTACACACAGATGAACAAATCCAACGACAACGATTGGTTCCGCATCTCCGCCGCCAACCCCCAAGGCACTCGTTGGACCGGTAAATGCTGGTACGTCTACAACCTCCTCAAGTACGAATTCGACCTTCAATTCGATATCCCCGTCACTTACCCTTCCACCGCTCCCGAACTCGAACTCCCTCAATTGGATGGAAAGACCCAAAAGATGTATAGGGGTGGAAAGATCTGCTTGACCGTGCACTTCAAGCCTCTCTGGGCCAAAAATTGTCCCAGATTTGGTATTGCACACGCACTTTGCTTAGGCCTTGCACCGTGGCTTGCAGCCGAGGTTCCCATTCTTGTGGATTCTGGTATGATCAAGCACAAAGATGACACCGCAACCACATCAACTGAATCTTAG 528 0.5208 MEGWDPNTKSTLTQIPLLTRKAGPRDGAAWTQRLKEEYKSLIAYTQMNKSNDNDWFRISAANPQGTRWTGKCWYVYNLLKYEFDLQFDIPVTYPSTAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEVPILVDSGMIKHKDDTATTSTES 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01354 175 Pfam Ubiquitin-fold modifier-conjugating enzyme 1 8 163 IPR014806 GO:0061657|GO:0071569
Cca03g01354 175 SUPERFAMILY UBC-like 5 164 IPR016135 -
Cca03g01354 175 Gene3D Ubiquitin Conjugating Enzyme 1 170 IPR016135 -
Cca03g01354 175 PANTHER UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 5 172 - -
Cca03g01354 175 PIRSF Ufc1 3 168 IPR014806 GO:0061657|GO:0071569
Cca03g01354 175 PANTHER UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 5 172 IPR014806 GO:0061657|GO:0071569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01354 K12165 - gmx:100527748 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01354 03 31608506 31610401 Cca03g01354 03 31608506 31610401 ECH