Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01350 ATGGCCCTTTCCACCTCCTTCTCCGCTGCCAAATTGGACTCTCTATTGCTCAATTGCTCTTCCTCTTCAACCCCATTCTTACACACCGTTTCTATCGCCCAAAATACGAGAACAAAAACCCTCTTTCAGAGAGGGCTTATTCGCTGCGACGCTCAGCCCTCTTATGCTCCCAATAATGCTTCCACCCTCTCCGCTCTCCAGCAGCTTAAGACTTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTTAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAGCTTGCCATTCCAGAGGCAGAATGGCCTAGAGCTATTGCAGAGCTCTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTCTTGCTCTTTCCCAACATCGTGGTGTCAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCCGTCCCTATTTCTGAGCTTTGCCAGCACCAGTTTGTACTTTACAACAATGATGTCACACAGCATCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTTTTGGGGGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGAAATATCAGTGGGCTATTCAAGCATGCGATTACTGTTGGGAAAAGGGTTAGAACTGAAACTAATATTGCTTCTGGGGCAGTTTCTGTGAGCTCAGCTGCTGTTGAATTAGCCTATATGAAGCTACCTGAAGCCTCACATGATAATGCGAGGATGTTGGTTATTGGTGCTGGCAAGATGGGAAAGCTTGTGATCAAACATTTGGTGGCAAAAGGTTGCAAAAAGATGGTTGTTGTCAATAGAACTGAGGAGAGAGTGGCTGCAATACGTGAAGAACTGAAAGATGTTGAGATCATCTACAAACCCCTTTCAGAAATGCTAACCTGTGCCAGTGAAGCAGATGTAGTTTTCACCAGTACTGCATCGGAAAACCCATTATTCTTGAAAGATCATGTCAAGGACCTTTCTCCTGCAAGTCAAGATGTTGGAGGCCGTCGCTTTTTCATTGATATCTCTGTTCCCCGCAATGTGGGTTCATGTGTCTCAGACCTGGAGTCTGTGCGAGTTTACAATGTTGATGATCTTAAGGAGGTTGTGGCTGCCAATAAAGAGGATCGCCTAAGAAAAGCAATGGAAGCGCAGGCAATAATAGCTGAAGAATCTAAGCAATTTGAAGCTTGGAGGGACTCACTGGAAACTGTCCCGACTATTAAGAAATTGAGGGCTTATGCCGAAAGAATCAGGCTTGCTGAGCTTGAGAAATGCTTAGGTAAGATGGGTGATGATCTGCCAAAGAAAACACGGAGAGCAGTGGATGATCTTAGTCGGGGTATAGTGAATAAGTTGCTCCATGGTCCAATGCAACATTTAAGGTGTGACGGGAATGACAGCCGGACTCTTAGTGAGACCCTGGAGAATATGCATGCTTTGAATAGGATGTTCAACCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGATTCGAGCAAAGGTGGAACAAAACCAAAAATGA 1599 0.4453 MALSTSFSAAKLDSLLLNCSSSSTPFLHTVSIAQNTRTKTLFQRGLIRCDAQPSYAPNNASTLSALQQLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVMEWMSKTSSVPISELCQHQFVLYNNDVTQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAYMKLPEASHDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDVEIIYKPLSEMLTCASEADVVFTSTASENPLFLKDHVKDLSPASQDVGGRRFFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDLPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMHALNRMFNLETEISVLEQKIRAKVEQNQK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01350 532 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 408 512 IPR015896 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 406 510 IPR036453 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 Pfam Shikimate / quinate 5-dehydrogenase 253 394 IPR006151 -
Cca03g01350 532 Coils Coil 295 315 - -
Cca03g01350 532 Coils Coil 509 532 - -
Cca03g01350 532 PANTHER GLUTAMYL-TRNA REDUCTASE 1 532 - -
Cca03g01350 532 TIGRFAM hemA: glutamyl-tRNA reductase 84 493 IPR000343 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 ProSitePatterns Glutamyl-tRNA reductase signature. 180 203 IPR018214 GO:0008883
Cca03g01350 532 CDD NAD_bind_Glutamyl_tRNA_reduct 84 406 - -
Cca03g01350 532 Gene3D - 82 242 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 83 239 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 87 237 IPR015895 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 532 - -
Cca03g01350 532 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 242 402 IPR036291 -
Cca03g01350 532 Hamap Glutamyl-tRNA reductase [hemA]. 83 510 IPR000343 GO:0008883|GO:0033014|GO:0050661
Cca03g01350 532 Gene3D - 243 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01350 Cca-Chr3 31566059 31568805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01350 K02492 - gmx:100782247 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01350 03 31566059 31568805 Cca03g01350 03 31566059 31568805 ECH