Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01349 ATGGGCACTGGTTGGAGAAGAGCTTTCTGCACCCGCGACCCTGCCTCTACCATATCAGATAAGCAGCCCGGAAGCCCAAGCCCAAGCCCCAGCCCAAGAAGCTGCGCCCGATTGGGCTTTCTCTCCGGAGGTAGCAACCCCTCCACTCCACGCTTGCGTTGCACGACCACCGTGGAAACTGCTTCTCAAACAGTAAACGAAAGCCCCAGAGTTCAAAGCAAAACCACCCCTAGAGCAGCCAAGTCCCCCAAAACACACTCGGTTTCAAATCCAACTTCTCCGCGCTCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAGCAGCGTGAAGACGGGACAGGGTACGGCGATTTACACTGCGGAATGCGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTACGCAAACACGGTAGCCTCGTGTGTCCCGTGTGCAACGCCACGTGGAAAGACGTGCCTCTACTCGCGCCTCACAAGAACCTCGCGCCACAATCCGCCACGCAAAACGACGTCGCTCAGAGAACCCTCAATGCAAGCGACAAAAAGCCATCAGAAAACTCCTCCACCAACACCCACGTGGAGCCACCCAAGCACTCCGATTCGCTCAGGTCCTACCACGACGACGAGCCTCTCCTCTCTCCCGCCTCCGCCGCCCGGATTATTCCCATTCCcgaagccgacgagaatgccgaagacgacgacgacgacgacgaagacgccggcgaGTTTCAAGGCTTCTTCGTCCATCCCAAGAACTCATCCTCATCAAAGTCCTACTCCGATTCCTTCCAAAGCAGCGACGGTGACTCCAGAACGGTCCAGGTGAAACTCATGCCAGAGTGCGCAATCATATCAGCCTCCCGAACTCACGAGACCTACGCTCTGGTCTTAAAAGTGAAGGCTCCACCGCCGCCGCCTCCAAATAGAAACAGCGGGGCTCCGTCGCAGCGCGCGCCGATAGATCTGGTGACCGTTCTGGACGTGGGAGGAAGCATGAGCGGCGCGAAGCTCCATATGCTAAAGCGCGCGATGCGTTTGGTTATCTCATCGCTTGGCCCCGCTGACAGGCTCTCCATAGTGGCTTTCTCCGCCAGCTCGAAACGCCTCTTACCGTTGCGAAGAATGACGGCTCAAGGGCAGCGCGTGGCTCGGCGCATCGTCGACCGGCTCGTCATCGGTCAAGGCTCCAGCGTAGGGGACGCGCTGAGGAAAGCCACCAGAGTGTTGGAGGATCGTAGAGAGAGAAACCCGGTGGCCAGCGTTATGCTGTTATCCGACGGCCAGGAAGAGAGGGTTCAAAATCAGAGAGGTAATAATAATAATAATCAACGGAAGGCGTGGAGCCACGTGTCCTCAACCCGGTTCGCGCATATCGAGATTCCGGTTCACGCGTTTGGGTTGGGGGCGAAAAGCGGTTACAGTGAGGAAGCGGGGGGGGATGAGGATGCATTTGCCAAGTGTGTAGGTGGGGTTTTGAGCGTGGTGGTGCAGGATTTGAGGATTCAGGTGGAGTTGGAGTCTGAGACGGTGGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCCACGCTGATGAGTTCAGGCGCCGTGCGTCTTGGCGATTTGAGGGAAACTAAAAAAATATACGTGCGTCTTGGCGATTTGTACGCGGAGGAAGAGAGGGAGCTCCTAGTGGAGTTGAGAGTGAGAGTTCCGGCGTCGGGAAGTGGGAGTGGAAGCCATCACGTGATGACGGTACGGTGCCTGTATAAGGACCCTGCCAGTCAGGAGATTGTATACGGTAGGGAACAGGGACTTGTGGTGCCGCCGCCGCAGAGCGTGCGTTGTTCCGGTACTAGAATTCAGAGGCTCAGGAATCTGTTCATAACAAGCCGAGCCATCGCCGAGTCTAGGAGGCTCGTGGATCATAACGCTGACTTCAGCAGCGCTCATCATTTGCTTGCCTCGGCGCGTGCGCTTCTCATGCAGAATAGTTCTGCTTCGGCTGAGGAATACATTCGCGGCCTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGGAGACAGCATGAGCAGCGGAGAAGAGAGGTGACGCTGGTGGATGAGAATGGCGAGCCGCTTACGCCGACGTCGGCTTGGAGACCCGCCGAGAAGCTGGCTAAGATGGCAATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2244 0.5504 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTVETASQTVNESPRVQSKTTPRAAKSPKTHSVSNPTSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAPHKNLAPQSATQNDVAQRTLNASDKKPSENSSTNTHVEPPKHSDSLRSYHDDEPLLSPASAARIIPIPEADENAEDDDDDDEDAGEFQGFFVHPKNSSSSKSYSDSFQSSDGDSRTVQVKLMPECAIISASRTHETYALVLKVKAPPPPPPNRNSGAPSQRAPIDLVTVLDVGGSMSGAKLHMLKRAMRLVISSLGPADRLSIVAFSASSKRLLPLRRMTAQGQRVARRIVDRLVIGQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNNNNNQRKAWSHVSSTRFAHIEIPVHAFGLGAKSGYSEEAGGDEDAFAKCVGGVLSVVVQDLRIQVELESETVEMSAIYSCSGRPTLMSSGAVRLGDLRETKKIYVRLGDLYAEEERELLVELRVRVPASGSGSGSHHVMTVRCLYKDPASQEIVYGREQGLVVPPPQSVRCSGTRIQRLRNLFITSRAIAESRRLVDHNADFSSAHHLLASARALLMQNSSASAEEYIRGLEAELAELHWRRQHEQRRREVTLVDENGEPLTPTSAWRPAEKLAKMAMMKKSLNRVSDLHGFENARF 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01349 747 CDD vWA_C3HC4_type 332 508 - -
Cca03g01349 747 SMART ring_2 113 157 IPR001841 -
Cca03g01349 747 MobiDBLite consensus disorder prediction 173 283 - -
Cca03g01349 747 MobiDBLite consensus disorder prediction 260 283 - -
Cca03g01349 747 ProSiteProfiles VWFA domain profile. 333 527 IPR002035 -
Cca03g01349 747 Pfam von Willebrand factor type A domain 334 440 IPR002035 -
Cca03g01349 747 MobiDBLite consensus disorder prediction 173 207 - -
Cca03g01349 747 Pfam RING-like zinc finger 113 142 IPR001841 -
Cca03g01349 747 CDD RING-H2 113 158 - -
Cca03g01349 747 SUPERFAMILY RING/U-box 107 164 - -
Cca03g01349 747 MobiDBLite consensus disorder prediction 239 253 - -
Cca03g01349 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 211 IPR013083 -
Cca03g01349 747 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 747 - -
Cca03g01349 747 MobiDBLite consensus disorder prediction 41 96 - -
Cca03g01349 747 SUPERFAMILY vWA-like 331 483 IPR036465 -
Cca03g01349 747 ProSiteProfiles Zinc finger RING-type profile. 113 158 IPR001841 -
Cca03g01349 747 MobiDBLite consensus disorder prediction 1 96 - -
Cca03g01349 747 Gene3D von Willebrand factor, type A domain 333 501 IPR036465 -
Cca03g01349 747 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 747 - -
Cca03g01349 747 SMART VWA_4 331 523 IPR002035 -
Cca03g01349 747 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01349 Cca-Chr3 31557505 31560060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01349 - - gmx:100782780 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01349 03 31557505 31560060 Cca03g01349 03 31557505 31560060 ECH