Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01344 ATGAATTTGTTTAAGCTTCCAACGCAACTCTTCTCACCGCCACAATATATTTACTCCATGCTCATTCCTCATCACCCTATTTTATTAAATTCCACTTCTGTCCCTACCCCCATTTCAGACCATCCTTCTCCTTCTTTTCCTCGTTTCTCTTTACGCTCAGATATGGATACTGCTGTTGCAGGTCAAAGTCTTTACCCCTTGCACCGTTGTAAAACTCTTCACCTGGTTAGACATGCTCAAGGAGTTCACAATGTAGAAGGTGAGAAGAACTTTGAAGCATACAAGTCTTATGATCTTTATGATGCACACCTGACCCCTCTTGGTTGGAAACAGGTTGATAATCTGAGAGAACATGTTAAGGCAAGCAGTCTTTCTCGAACAATTGAACTAGTTATTGTTTCTCCCTTGTTAAGGACCATGCAAACAGCAGTTGGAGTCTTTGGTGGTGAAGCACATACTGATGAGATTAGTGTACCTCCCCTGATGAATGACAATGTGGGAGATAGTGATCGCCGTGCAATTTCTAGTCTGAATGTCCCACCATTTATAGCAGTAGAGCTTTGCCGAGAACATTTGGGTGTACATCCCTGTGACAAGAGAAGAAGTATCACTGAGTACCGACAAATGTTTCCAGCAATTGATTTCTCATTGATAGAAAATGATGAGGACATTTTGTGGGAACCTGACATTAGAGAGAAGAATGAAGAAGTTGCTGCCCGGGGACTGAAGTTTTTGGAATGGTTGTGGACACGTAAAGAAAATGAGATAGCTGTTGTTACCCACAGCGGTTTTCTGTTTCATACCCTAAGTACTTTTGGTAATGATTGTCATCCAACTGTGAAGAGTGAAATCTGCACGCACTTTGCTAATTGTGAGCTACGCTCAATGGTTATCGTTGATAGAGGTATGATTGGTTCAGCTGAGTCCTCTACCAACTATCCTGGCAAAATTCCATTTGGCCTTGACCTTCCTAGTGATGTTGCTGACCAGAAACTTCCAGAAAATGGACAATGA 1014 0.4201 MNLFKLPTQLFSPPQYIYSMLIPHHPILLNSTSVPTPISDHPSPSFPRFSLRSDMDTAVAGQSLYPLHRCKTLHLVRHAQGVHNVEGEKNFEAYKSYDLYDAHLTPLGWKQVDNLREHVKASSLSRTIELVIVSPLLRTMQTAVGVFGGEAHTDEISVPPLMNDNVGDSDRRAISSLNVPPFIAVELCREHLGVHPCDKRRSITEYRQMFPAIDFSLIENDEDILWEPDIREKNEEVAARGLKFLEWLWTRKENEIAVVTHSGFLFHTLSTFGNDCHPTVKSEICTHFANCELRSMVIVDRGMIGSAESSTNYPGKIPFGLDLPSDVADQKLPENGQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01344 337 SMART PGAM_5 72 268 IPR013078 -
Cca03g01344 337 CDD HP_PGM_like 72 143 IPR013078 -
Cca03g01344 337 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 49 329 - -
Cca03g01344 337 SUPERFAMILY Phosphoglycerate mutase-like 71 302 IPR029033 -
Cca03g01344 337 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 49 329 - -
Cca03g01344 337 Pfam Histidine phosphatase superfamily (branch 1) 73 146 IPR013078 -
Cca03g01344 337 Gene3D - 70 314 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01344 Cca-Chr3 31429712 31436472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01344 - - gmx:548047 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01344 03 31429712 31436472 Cca03g01344 03 31429712 31436472 ECH