Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01337 ATGGACATGGGAACTGTGCCCGATCAAACAATTAGTACATGCACTCACTGTGATCGGGCTATCCCTTCGGCAAATATTGAATTACATTATGCTCATTGTTCCCGAAACCTTGAAAGGTGCAAAATTTGTTACGAGATGGTTCCGAAACTACGTGCTGAGGAGCACTATTTAAACACCCATGCCCCGGTTTCCTGTTCGTTGTGCAGTGAGACTATGGAACGTGATATTTTAGATATCCATAGAGGTGAAAATTGTATTAGAAGAATGGTCACATGTGAGTTTTGTGAGTTTCCTTTGCCAGCAATTGATCTGGCTGAGCATCAGGAAGTATGCGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAAAGATACAACCATGAAGATAGTTGCAACAGAATTCAAGACAATTCTGCAGGGTCGTCAAGGTACGTCAGGCCAGCTGAAAGAGATGATGGTGCTCAAAGAAGGCCACGGCCACGGCCACGGCCACAAAATGATTTATCAAAAAGACGTCTTCTTTTCACAATAGCAATTACTGGTATTGCTGTTATGCTCGGATCCATTTTTTTCCAGAGAAAGACAGATCCCAGCAGTGTGCAATAG 624 0.4295 MDMGTVPDQTISTCTHCDRAIPSANIELHYAHCSRNLERCKICYEMVPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQDNSAGSSRYVRPAERDDGAQRRPRPRPRPQNDLSKRRLLFTIAITGIAVMLGSIFFQRKTDPSSVQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01337 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 59 IPR013083 -
Cca03g01337 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 113 IPR013083 -
Cca03g01337 207 MobiDBLite consensus disorder prediction 151 173 - -
Cca03g01337 207 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 7 206 - -
Cca03g01337 207 MobiDBLite consensus disorder prediction 144 173 - -
Cca03g01337 207 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 7 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01337 Cca-Chr3 31365067 31368437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01337 - - gmx:100306673 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01337 03 31365067 31368437 Cca03g01337 03 31365067 31368437 ECH