Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01331 ATGCGTGTTACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGTTGCTGCTCCTCATCGGCTTCGTAATTCGCCGTAAATGGCAGGTTTCGGAGGCTAGGAAGGACGAGATTAAGAGGCTTTTGATTTTGGCGGCGGAGGAAACTGCCAGGGCCGAGAAAGAAGCGTTCTATGAGTACGACACGGCGCTTTCTGCCGCTCGGACCAATCAATGCGCTGTCTGTTATTTTCCCGCCACCGCGCGCTGCTCTCAGTGCAAATCGGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAAATCACCGGAGTGATGATGTAACAAGTGATGTTGGCAGCAAGGTAGTAGAGCAAGGCTACTCTGGAATCCATGGTGAGAAGCCCAAAAGTGAAAGCACAGAATGTAAAACAGCTTCTGAAAAGCCCAGAATTTCTGATATCAGCTTCTCTCCAAAAGTTTCATCTGGAAAGGATGACAATATCAGAGTCGAGTCCCTTGCTGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAATTCATTTTCTGGATTCTCAGCTTCCACAGGTTCTAGCGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAATGAGCATGACAGACCAGAGGGACATATGTTTGTTGATCCCACCCTTGACATTGCAGATAACATTTCAAATGATGATAGCATGGGTGTAACCATGTCTTCTTCACCAAAGTTTGCTAGTTTGGTTGAGTCAGTAGATGGTTTTTCTACAAAGAATAAATTAAACCACATTAGACCTGGTTTTAGTGAAGAAGAGAGTAAGCTTGCATCAAATGTTAAAGCATCTTCAAGTATGGGGAAAACAATTCAGCCTTCTACAGCATTTTCTGGATTCTGGGATAAAGCTCTTGATCCAAGAGGGATTAAAGATAATAATATTAAGAATGACACCCATTCATCCAGTTCTGATGAATCCATGGGCAAAAAGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATTCCCCCTTTTCATGTACGAGATACCAAGACAAAGGATTGTGTATCTGATGATGCTGTTTCAAACTGTAATGGGAACAATATGCCATTTTCAGGATCAGCATCGTCTAAGAATGACAACATGAGTTCTTCAAAGGGGGGAGATTTCTCATTCATCAACAGCCGAACTTCCAATGTTATGACCTATGGTACTCCAAGTGGTTCTGAATCTGAGCAACTGGAGTCTAAAGACAGTTCTGGGCCACCTTTATCTTTCTCCACTCAATCCTCCAGTGTTGACAAAGAATCAGTTAGTGCAGATGCTTTGAACATACATAACTTGCAATCAACTGGCTCTATGGTATCAAATCATGTGGTGGACAACTGTGGCAGCACCTTGAAATCCTCTGAAATTAGATGCCTGACGGATGAGCTTGCTGATTCTAATTTAGCTTCAAGAACTGAAGCGCATTTACATTCCAGTACAACATGTGGGAACAATGACATTAAATCTGAAACTCGAGCTGTCACTTCCTCTCGGGTCGCTAGCTATTCTGTAAATTCTAAGAGTGGCTTGAGAACATCTGTTCTGAAAGTTGTTGATCAGTTTAGAGGATCAAATTTGTCAAAGCACTTTCCATTAGCCGTTGGGAGTGATATTGCTGGAAGACACGATGACAAGGGTTTTTTTTCTTATGAATTATTTGTCAAGCTTTATAACTTGAACAAGGTGGAGTTGAGCCCGTTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCCAATGCTGTACTTCAGTGCTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGATTACATTCTAAATCATGTGCAAATACAAAATGGTGTTTCACTTGTGAATTTGAAAGATTGATTTTGAAGTCAATGGGCACAAAATCTCCTGTGTCTCCTATGGGCATAATCTCTCATTTACAGAATATTGGGAGTCAGCTTGGTAATGGCAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCAGGCTCAGTAGAACAGGACACTACTTTAATAGGTCTAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATTACAACCCTGGTGGAGGCCCTTCAGCGGTTTACAAGCACTGAGACTTTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCTTACGAGAGGGCCAAGAAGAAGCTGACAGTATCAGAGGCACCTAATGTTCTTACAGTTGCATTGAAGAGATTTCAGTCAGGAAAATTTGGGAAGCTCAACAAGCCTGTTCAATTTCCTGAAATACTCAACTTGGCACCTTTCATGAGTGGTACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATGTCATGAATGCAGCCTTTTCGGGTCACTATGTGTGCTATTTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACGCCCATTGAATTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTACGCAAGGTGCTCGCCAAGGGCCCCAAGATTAGTTAGGAACAGAATACTATCCCCGGATTCAAAAAGTAAAGTCAGTGGAAAGACTCATACAACGAAAGCAAGACATGTATCTCCAAATTCTGGTGCTGCCGAACACGTGAATAGTTCCATTTCTCCAGATGGGTCACCTGGCTTAGAGTCTTTCTATTCAAAGTTTCACCACCTGAAAAGGATTTTAGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACCGATAGTACCCGTGATTCAACCAGCACAGATGACTTGTCCGATTATATTTTTGGTGATTCAGGGAATGGGTGGAGTAGTTTGTGGAGGAATTCTGATTCTGATGCATCCTCGTCCTCCTCATCTTCTCCCTTAACCTCTCGACATTCGCCCCTATCTGATATGGACCGGTATGATTCAGTCTCTCCTGATGCTGAAAGGAGAGGGATAGATGTTTCTGGTTTGCATTCTAACACAAGTTTACAGCATAGAAAGTTAGATAGTGGTAGGATTAGTAGAAATAGAAATAGTAGGGAGACTGACTCTTTTCTGAAACTAGGATCTAACCATTTTAATGATATAGACTCTGGAGGTGTATCATGTAGAAAGTCGAGAAAAAGAACGGATTAA 3372 0.419 MRVTGDLGFSSLVLVLLLLIGFVIRRKWQVSEARKDEIKRLLILAAEETARAEKEAFYEYDTALSAARTNQCAVCYFPATARCSQCKSVRYCSFECQTVHWRQGHKLECRPPSTNHRSDDVTSDVGSKVVEQGYSGIHGEKPKSESTECKTASEKPRISDISFSPKVSSGKDDNIRVESLAEGNITDSNSELSSNSFSGFSASTGSSDSSDDSSVCESIISNEHDRPEGHMFVDPTLDIADNISNDDSMGVTMSSSPKFASLVESVDGFSTKNKLNHIRPGFSEEESKLASNVKASSSMGKTIQPSTAFSGFWDKALDPRGIKDNNIKNDTHSSSSDESMGKKTVSESSFHFSFSTIPPFHVRDTKTKDCVSDDAVSNCNGNNMPFSGSASSKNDNMSSSKGGDFSFINSRTSNVMTYGTPSGSESEQLESKDSSGPPLSFSTQSSSVDKESVSADALNIHNLQSTGSMVSNHVVDNCGSTLKSSEIRCLTDELADSNLASRTEAHLHSSTTCGNNDIKSETRAVTSSRVASYSVNSKSGLRTSVLKVVDQFRGSNLSKHFPLAVGSDIAGRHDDKGFFSYELFVKLYNLNKVELSPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANTKWCFTCEFERLILKSMGTKSPVSPMGIISHLQNIGSQLGNGREEDAHEFLRHVIDTMQSVCLMEAGVNASGSVEQDTTLIGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEITTLVEALQRFTSTETLDGENKYHCVRCKSYERAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPVQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDVMNAAFSGHYVCYLKNIQNKWFKVDDSVVTPIELERVLTKGAYMLFYARCSPRAPRLVRNRILSPDSKSKVSGKTHTTKARHVSPNSGAAEHVNSSISPDGSPGLESFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDLSDYIFGDSGNGWSSLWRNSDSDASSSSSSSPLTSRHSPLSDMDRYDSVSPDAERRGIDVSGLHSNTSLQHRKLDSGRISRNRNSRETDSFLKLGSNHFNDIDSGGVSCRKSRKRTD 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01331 1123 MobiDBLite consensus disorder prediction 1046 1065 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 186 215 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 141 155 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 320 337 - -
Cca03g01331 1123 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 16 1100 - -
Cca03g01331 1123 Pfam Ubiquitin carboxyl-terminal hydrolase 598 900 IPR001394 GO:0004843|GO:0016579
Cca03g01331 1123 MobiDBLite consensus disorder prediction 320 342 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 931 955 - -
Cca03g01331 1123 SUPERFAMILY Cysteine proteinases 595 905 IPR038765 -
Cca03g01331 1123 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 598 903 IPR028889 -
Cca03g01331 1123 SUPERFAMILY HIT/MYND zinc finger-like 68 111 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 1025 1094 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 1025 1044 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 383 448 - -
Cca03g01331 1123 Gene3D - 57 113 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 133 174 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 912 955 - -
Cca03g01331 1123 Gene3D Cysteine proteinases 591 912 - -
Cca03g01331 1123 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 599 614 IPR018200 GO:0004843|GO:0006511
Cca03g01331 1123 ProSitePatterns Zinc finger MYND-type signature. 72 109 IPR002893 -
Cca03g01331 1123 ProSiteProfiles Zinc finger MYND-type profile. 72 109 IPR002893 -
Cca03g01331 1123 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 1100 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 977 1009 - -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 1080 1094 - -
Cca03g01331 1123 Pfam MYND finger 72 109 IPR002893 -
Cca03g01331 1123 MobiDBLite consensus disorder prediction 976 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01331 Cca-Chr3 31217878 31226329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01331 500 907 Miscellaneous Gene Families AT4G31670 44.391 2.67e-118 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01331 K11855 - gmx:100793079 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01331 03 31217878 31226329 Cca03g01331 03 31217878 31226329 ECH