Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01330 ATGGACGTTAAGTTGGCCACCGCCTTAATAGTTTTGTCTGCAATTTGCCTCAGCAGGGTCATGGCCATTGACCCATGCGCCTCTCAGCAAGATAACTCCGACCTCAACGTCATTCCCATCTACAGCAAATGCTCACCCTTCAACCCACCCAAGGGAGACTCGTGGGACAAGAGAATCGTGAACATGGCCTCAAAAGACGCAGCCCGAGTCAAGTACTTGTCCACATTAGCGGCCCAAAAGACGGTCTCCACGGCCCCAATCGCTTCGGGCCAGGCCTTCAACATCGGCAACTACGTGGTGCGGGTCAAACTGGGCACCCCCGGTCAACTCCTCTTCATGGTCCTGGACACCAGCACCGACGAGGCCTTCGTCCCGTGCTCCGGCTGCACGGGCTGCTCCGACACCACTTTCTCCCCCAAAGCCTCCACCAGTTACGGCCCATTGGACTGCTCTGTCCCGCAATGCGGTCAGGTCCGTGGGCTTTCCTGCCCCGCCACAGGCTCAGCCGCGTGCTCCTTCAACCAATCCTACGCGGGCTCCTCTTTCTCCGCAACACTCATCCAAGACTCTCTCAGGTTAGCCACTGATGTTATCCCCAATTATTCATTCGGCTGCGTCAACGCCATCACCGGGGCCTCGGTTCCGGCCCAAGGGCTTCTGGGCTTGGGCCGCGGCCCATTGTCGTTGCTTTCACAATCCGGGACACTCTACTCGGGGCTATTCTCTTACTGCCTCCCCAGCTTCAAATCGTACTACTTCTCCGGGTCGCTCAAGCTTGGGCCCGTGGGCCAGCCCAAGAGCATCCGCACCACCCCGCTTCTCCGCAACCCGCACCGGCCTTCTCTTTACTACGTGAACCTCACCGGAATAAGCGTGGGACGCGTCCTCGTGCCAGTGGCCTACGAGTATCTTACGTTCAACCCGAACACCGGATCCGGAACCATAATCGATTCGGGCACGGTGATAACCCGGTTCGTGGCACCCATTTACAATGCGGTGAGGGAGGAGTTTAGAAAACAAGTGGGGGGAACATTCTCGAGCATTGGAGCTTTCGACACGTGTTTTGTGAAGAACTACGAAACACTGGCGCCGGGAATTACGCTTCACTTCGAGGGCTTGGACTTGAAGCTGCCATTGGAGAACAGCTTGATCCATAGCAGCGCAGGGTCGCTGGCTTGCCTTGCAATGGCGGCGGCGCCGGATAATGTGAACTCGGTGTTGAACGTGATTGCCAACTTTCAGCAACAGAACCTTAGGATTTTGTTTGATACCGTGAATAATAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAG 1314 0.5647 MDVKLATALIVLSAICLSRVMAIDPCASQQDNSDLNVIPIYSKCSPFNPPKGDSWDKRIVNMASKDAARVKYLSTLAAQKTVSTAPIASGQAFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGSAACSFNQSYAGSSFSATLIQDSLRLATDVIPNYSFGCVNAITGASVPAQGLLGLGRGPLSLLSQSGTLYSGLFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNLTGISVGRVLVPVAYEYLTFNPNTGSGTIIDSGTVITRFVAPIYNAVREEFRKQVGGTFSSIGAFDTCFVKNYETLAPGITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01330 437 PANTHER ASPARTYL PROTEASE AED3 7 437 - -
Cca03g01330 437 Pfam Xylanase inhibitor C-terminal 283 432 IPR032799 -
Cca03g01330 437 SUPERFAMILY Acid proteases 91 436 IPR021109 -
Cca03g01330 437 PANTHER ASPARTYL PROTEASE-RELATED 7 437 IPR001461 GO:0004190|GO:0006508
Cca03g01330 437 Gene3D Acid Proteases 261 437 IPR021109 -
Cca03g01330 437 ProSiteProfiles Peptidase family A1 domain profile. 98 432 IPR033121 -
Cca03g01330 437 Pfam Xylanase inhibitor N-terminal 98 260 IPR032861 -
Cca03g01330 437 Gene3D Acid Proteases 74 260 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01330 Cca-Chr3 31206545 31208315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01330 63 437 Miscellaneous Gene Families AT1G77480 26.202 1.01e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01330 - - gmx:100816307 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01330 03 31206545 31208315 Cca03g01330 03 31206545 31208315 ECH