Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01327 ATGACAAACACAAGTGCAGAATTGTCTCAGGGAATTGGAGGTGTTTCTCTTCCCCACTCTAATTCCCAGTCTGCGTCACAAGAGCATAATCAGCGTTCTCATGGTGGTAACGGCAATATGATTTTCAAGAGTGGACCACTTTTCATATCTTCCAAAGGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCAAACGCTGTCCCTCAGAGGGGAAATGAAGTGAATTTGACCCTTGGTGGCATTGACCTCAACAATTCAGGCAGTGTTGTTATCAAACCAGATAAGAAACTTTTGACTGTACAATTTCCTGATGTTCATGACGGACGAGCTTTCACACTTAAGGCTGAAACTACGGAGGATTTATATGAGTGGAAGACTGCACTTGAGAATGCTTTGCAACTGGCACCTAGTGCTGTCAATGTGACGGAGCAAAATGGTATCTCCAGGAACGATCAGACTGATTCAATTGATATTTCTTTGGACCAGTTGAAGGATAGAGAACCAGTTAAATCTACTGTCATTGGCCGGCCAATTTTACTTGCTTTGGAGGATGTTGATGGAACTCCTTCATTTTTGGAGAAAGCCCTAAAGTTCATAGAAGAGCATGGAGCCAATGTGGAAGGGATATTGCGACAAGCAGCTGATGTTGATGAGGTTGAACGTCGAGTTCGAGAATATGAACAAGGGAAAGTTGAGTTTTCTCCAGATGAGGATGCACATGTTGTTGGTGATTGTATTAAGCATGTACTTCGTGAATTGCCATCTTCTCCAGTCCCGGCATCTTGTTGTAAGGCACTGTTAGAATCTTGCCGAACTGAGCGGTGTAGTAGGGTTGCTGCTATGCGCGCAGCAATAAATGACACTTTTCCTGAACCAAATCGTCGCTTATTACAAAGAATACTTATGATGATGCAAATTGTGGCTTCACGCAAAACTGTGAATAGAATGAGCTCCTCGGCTGTGGCAGCTTGCATGGCGCCTTTACTTCTTCGGCCCCTTCTGGCTGGAGAATGTGAAATTGAAAATGACTTTGATGTAGGTGGTGATGGTTCTGTTCAACTTTTACAAGCAGCTGCTGCGGCAAATCATGCTCAAGCAATTTGTATAACTTTATTAGAAGAATATAGCAGCATATTTGGGGAAGGTTCTGTGTCCCCTGATATATACACTGACTCAGAAGAAGACAGTGGATCTGAGAGTGGGGAGGCAActgatgatgatttgtcctatgatgatgatgaagattatgatgatgAACAAGATGAATCAATACAGGGGTCTGATGCAGATGATCTTGTTAGTGAATCGTACAGCGGAACTGGAGATTCTGAGGCTGATGATGCATATGATGATGAGGGCCATGATCACGCTAGTTCAAGTTCGAAATCCTCAGGTGTGAGTGAAAAATTGAAACCCACTCGAAAGTTATCATCAAAGTCACTTGAAGTCTCAGTGACTCAACATGAAGATATCAAAAGCTCTGAACATCTCACCAGTCCAAATAAGACTGGCTATGTAGACCAGTCCAATAAGCCTGCTGATAAAGTTGAAGGAGTCTCCACTGACCAAGCTACATTGCATAATTCAAAGAATCCTAGCCCTGCTTCATGTATTAAAAAATCCAATACCATGTCCAATGGCCCAGCACCTCGGCATCGCACCTTGTTGGGGCGCACCTCTGCAAGGAAGAATCTTTCCATGGAATCCATTGATTTTCCAATTGAAGATGAAGAGGAAATTGAAAGGCTTGAAGCTGCTAGGGCAGAATTACAAACCCAAATTGCAGAGGAGGTGAAGGCAAATGCAGAGCTGCAGTCTCAAGCAGACAAACAAAAGAAAGCCTTGGATGACCGTCGTCTGTCTCTTGAGCACGATGTGGCTAGACTACAGGAACAGTTGCACAAGGAAAAGAATTCTCAGTTAGCTCTCGAGAACAAGACAGAGCTTGAGGAATTAGCTCTGGTAGAAGCAGATCTTGCCTACTTAGAGCGGAAGGTTAGGGAGCTTGGGGTGAGGCTTAATGCACAACTTCATCGGAATCATGGAACTACTTCGGATTTCTCTAGTCAACCACAACAGATATCAAATCAGGAAAGAAAATTGAAACAAAAGGCAGATGCTGAAGTTGCTGCCACATCACAATCTGACAGGTCAATAAGTAAGGGAATGGTAATGGCACAACAGGAGATTCATATCGGGAGAGCAGAAAATAATATTGAGAGAAAGCCAGAGTCAACACCTTTATCAAACAAACATCCACCAACTAGCTCCAGGAAATCTGGTACAAAGGGTGAGGGAGCAAATTCCACTACTTCTGCACTGACAAAACTGACATCCAGACTGAACTTTTTGAAGGTGGGCCGAAGTCATGTGGCAAATGAACTCCAAAATATGGATAAAGGCTCAAGTCGCTCTGAAAAAGGAAAAGGATCTGAACGTCCCCAAACACTTCCATCCCCCAATAGATATGGAGGCTCTGAAGCTCACTCGGAAAAGGGTAAAGGGTCGGAGTCAGTTCACATTTCAGAGAAAGGATTGAGCAAAGGTAAATCTCATCAAAGTTCAGACAAACTGAAGAAATCAGATAGCCAGCCATCTCATCACACAGATACATGGAATCAACAACCAAAACACTTGGAAAGAGGAAGGTCAGAAGGCCATCAGACTTATAATGTGGATAAAGGTCGATGA 2733 0.4255 MTNTSAELSQGIGGVSLPHSNSQSASQEHNQRSHGGNGNMIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPQRGNEVNLTLGGIDLNNSGSVVIKPDKKLLTVQFPDVHDGRAFTLKAETTEDLYEWKTALENALQLAPSAVNVTEQNGISRNDQTDSIDISLDQLKDREPVKSTVIGRPILLALEDVDGTPSFLEKALKFIEEHGANVEGILRQAADVDEVERRVREYEQGKVEFSPDEDAHVVGDCIKHVLRELPSSPVPASCCKALLESCRTERCSRVAAMRAAINDTFPEPNRRLLQRILMMMQIVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEIENDFDVGGDGSVQLLQAAAAANHAQAICITLLEEYSSIFGEGSVSPDIYTDSEEDSGSESGEATDDDLSYDDDEDYDDEQDESIQGSDADDLVSESYSGTGDSEADDAYDDEGHDHASSSSKSSGVSEKLKPTRKLSSKSLEVSVTQHEDIKSSEHLTSPNKTGYVDQSNKPADKVEGVSTDQATLHNSKNPSPASCIKKSNTMSNGPAPRHRTLLGRTSARKNLSMESIDFPIEDEEEIERLEAARAELQTQIAEEVKANAELQSQADKQKKALDDRRLSLEHDVARLQEQLHKEKNSQLALENKTELEELALVEADLAYLERKVRELGVRLNAQLHRNHGTTSDFSSQPQQISNQERKLKQKADAEVAATSQSDRSISKGMVMAQQEIHIGRAENNIERKPESTPLSNKHPPTSSRKSGTKGEGANSTTSALTKLTSRLNFLKVGRSHVANELQNMDKGSSRSEKGKGSERPQTLPSPNRYGGSEAHSEKGKGSESVHISEKGLSKGKSHQSSDKLKKSDSQPSHHTDTWNQQPKHLERGRSEGHQTYNVDKGR 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01327 910 Pfam PH domain 43 146 IPR001849 -
Cca03g01327 910 MobiDBLite consensus disorder prediction 841 880 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 887 910 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 1 37 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 806 910 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 406 442 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 695 712 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 762 788 - -
Cca03g01327 910 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 9 818 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 400 576 - -
Cca03g01327 910 CDD RhoGAP 203 341 - -
Cca03g01327 910 CDD PH 43 142 - -
Cca03g01327 910 Coils Coil 594 660 - -
Cca03g01327 910 SMART RhoGAP_3 200 390 IPR000198 GO:0007165
Cca03g01327 910 ProSiteProfiles Rho GTPase-activating proteins domain profile. 194 393 IPR000198 GO:0007165
Cca03g01327 910 Gene3D - 25 148 IPR011993 -
Cca03g01327 910 SMART PH_update 41 149 IPR001849 -
Cca03g01327 910 SUPERFAMILY PH domain-like 15 147 - -
Cca03g01327 910 MobiDBLite consensus disorder prediction 722 736 - -
Cca03g01327 910 Pfam RhoGAP domain 203 346 IPR000198 GO:0007165
Cca03g01327 910 SUPERFAMILY GTPase activation domain, GAP 202 395 IPR008936 GO:0007165
Cca03g01327 910 MobiDBLite consensus disorder prediction 535 563 - -
Cca03g01327 910 Gene3D Rho GTPase activation protein 171 394 IPR008936 GO:0007165
Cca03g01327 910 ProSiteProfiles PH domain profile. 40 147 IPR001849 -
Cca03g01327 910 MobiDBLite consensus disorder prediction 695 788 - -
Cca03g01327 910 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 9 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01327 Cca-Chr3 31182845 31199674 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01327 - - gmx:100796201 1372.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01327 03 31182845 31199674 Cca03g01327 03 31182845 31199674 ECH