LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01325	ATGGCATCAATCTCAGGCATTTGCTCCTCTTCCCCCGCTCTCAAAAGATACCCCAAGCAATCGCCATCGTTGACCATCTCTCTCCGCAAAGACCACGTGTCCCTCCCCGCGCGCCGCTTCGATCGGAGCCTGAGCCTCGCGCCGCCTCGCGCGGTGGCTCAGGAGGTTTCCGGCACGGAGGCCAAGGGACTGGAGACCGATCCTCACGCGCTGTGGCGGAGGTACGTGGATTGGCTGTACCAGCACAAAGAACTGGGGCTCTACGTGGACGTGAGTCGGGTCGGGTTCTCGGACGAGTTCGTGAGCAAAATGGAGCCCCGTTTCGAAGCGGCGTTTGGTGCTATGGAGGAGCTGGAGAAGGGTGCGATCGCGAATCCCGACGAGGGTCGCATGGTGGGGCACTACTGGTTGAGGGACCCCACGCGCGCACCCAACAACTTCCTCAGGACTCAGATTGAGAACACTCTCGACGCTGTTTCCGAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAGCCTCCTTCGTCTCCGGAGGGTCGCTTTACGCAAATACTGTCCATTGGAATTGGAGGTTCGGCGCTTGGACCACAGTTTGTTGCTGAGGCATTGGCACCTGATAATCCTCCACTCAAGATAAGATTTGTTGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCACAGCTTGGGCCAGAGCTAGCTTCAACACTTGTCATTGTCATTTCAAAGAGTGGAGGTACCCCAGAGACTAGAAATGGTTTATTAGAAGTGCAGAAGGCCTTTCGTGAAGCAGGCTTGGATTTCCCGAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAGGGCTGGTTAGCTAGATTTCCTATGTTTGATTGGGTGGGAGGTAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCGGCAGCCCTTCAGGGCATTGATATTAGAGAAATGCTTGCTGGTGCATCATTGATGGATGAGGCAAATAGAAGTACTGTGTTAAGGAATAACCCTGCTGCTCTTCTGGCTTTATGTTGGTATTGGGCTACAGATGGTGTAGGATCCAAGGATATGGTTATTCTTCCATACAAGGACAGCCTGTTATTATTTAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGAAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAACTGAGGGAAGGTGTTCACAATTTCTTTGTGACATTCATTGAGGTGCTCCGTGATAGACCCCCTGGTCATGATTGGGAACTTGAACCTGGTGTCACATGTGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTCTATGCTAATAAACGAGAGTCCATCACAGTCACTGTACAAGAAGTGACACCAAGAACAGTAGGTGCTCTTATTGCGCTATACGAACGAGCAGTAGGAATTTATGCCTCCCTTGTCAACATAAATGCTTATCATCAACCTGGTGTGGAAGCTGGTAAAAAAGCTGCTGGTGAAGTACTAGCACTTCAGAAGCGAGTATTGGCAGTGTTAAATGAGGCAAGCTGCAAAGAGCCTGTTGAGCCATTGACACTTGAAGAAGTAGCTGACCGTTGCCATGCTCCTGAAGATATTGAAATGATTTACAAGATTATTGCACACATGGCCGCTAATGACAGAGCAATAATTGCGGAAGGCAGCTGTGGTTCACCACGGAGCATCAAGGTTTTTCTTGGGGAATGTAACGTTGATGAATAA	1824	0.4912	MASISGICSSSPALKRYPKQSPSLTISLRKDHVSLPARRFDRSLSLAPPRAVAQEVSGTEAKGLETDPHALWRRYVDWLYQHKELGLYVDVSRVGFSDEFVSKMEPRFEAAFGAMEELEKGAIANPDEGRMVGHYWLRDPTRAPNNFLRTQIENTLDAVSEFANDVVSGKIKPPSSPEGRFTQILSIGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANKRESITVTVQEVTPRTVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLEEVADRCHAPEDIEMIYKIIAHMAANDRAIIAEGSCGSPRSIKVFLGECNVDE	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01325	607	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	1	607	-	-
	Cca03g01325	607	Gene3D	-	134	319	-	-
	Cca03g01325	607	Gene3D	-	320	515	-	-
	Cca03g01325	607	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	1	607	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	CDD	SIS_PGI_1	153	319	IPR035476	-
	Cca03g01325	607	ProSiteProfiles	Glucose-6-phosphate isomerase family profile.	35	539	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	184	203	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	296	314	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	372	393	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	474	492	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	492	506	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	PRINTS	Glucose-6-phosphate isomerase signature	506	519	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	Hamap	Glucose-6-phosphate isomerase [pgi].	21	533	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	ProSitePatterns	Phosphoglucose isomerase signature 2.	506	523	IPR018189	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	SUPERFAMILY	SIS domain	57	533	IPR046348	GO:0097367\|GO:1901135
	Cca03g01325	607	CDD	SIS_PGI_2	365	529	IPR035482	-
	Cca03g01325	607	Pfam	Phosphoglucose isomerase	115	440	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Cca03g01325	607	Pfam	Phosphoglucose isomerase	472	531	IPR001672	GO:0004347\|GO:0006094\|GO:0006096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g01325	Cca-Chr3	31147947	31153771	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01325	K01810		-	gmx:100791285	1129.01

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01325	03	31147947	31153771	Cca03g01325	03	31147947	31153771	ECH